Mir-190-P1

MirGeneDB ID

Gga-Mir-190-P1

Family name

MIR-190 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-190a

Paralogues

Gga-Mir-190-P3

Orthologues

Aae-Mir-190 Aca-Mir-190-P1 Aga-Mir-190 Agr-Mir-190 Ami-Mir-190-P1 Asu-Mir-190 Bfl-Mir-190 Bge-Mir-190 Bko-Mir-190 Bla-Mir-190 Bpl-Mir-190 Bta-Mir-190-P1 Cbr-Mir-190 Cel-Mir-190 Cfa-Mir-190-P1 Cja-Mir-190-P1 Cli-Mir-190-P1 Cmi-Mir-190-P1 Cpi-Mir-190-P1 Cpo-Mir-190-P1 Cte-Mir-190 Dan-Mir-190 Dlo-Mir-190 Dma-Mir-190 Dme-Mir-190 Dmo-Mir-190 Dno-Mir-190-P1 Dpu-Mir-190 Dre-Mir-190-P1b Dsi-Mir-190 Dya-Mir-190 Eba-Mir-190 Eca-Mir-190-P1 Egr-Mir-190 Esc-Mir-190 Ete-Mir-190-P1 Gja-Mir-190-P1 Gmo-Mir-190-P1a Gmo-Mir-190-P1b Gpa-Mir-190 Gsa-Mir-190 Hme-Mir-190 Hmi-Mir-190 Hru-Mir-190 Hsa-Mir-190-P1 Isc-Mir-190 Laf-Mir-190-P1 Lch-Mir-190-P1 Loc-Mir-190-P1 Mal-Mir-190-P1a Mal-Mir-190-P1b Mdo-Mir-190-P1 Mgi-Mir-190 Mml-Mir-190-P1 Mmr-Mir-190-P1 Mmu-Mir-190-P1 Mom-Mir-190 Mun-Mir-190-P1 Neu-Mir-190-P1 Npo-Mir-190 Oan-Mir-190-P1 Obi-Mir-190 Ocu-Mir-190-P1 Ofu-Mir-190 Ovu-Mir-190 Pab-Mir-190-P1 Pau-Mir-190 Pbv-Mir-190-P1 Pca-Mir-190 Pdu-Mir-190 Pfl-Mir-190 Pma-Mir-190-o1 Pmi-Mir-190 Pve-Mir-190 Rno-Mir-190-P1c Rno-Mir-190-P1d Rph-Mir-190 Sha-Mir-190-P1 Sko-Mir-190 Sma-Mir-190 Snu-Mir-190 Spt-Mir-190-P1 Sto-Mir-190-P1 Tca-Mir-190 Tgu-Mir-190-P1 Tni-Mir-190-P1a Tni-Mir-190-P1b Tur-Mir-190 War-Mir-190 Xbo-Mir-190

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(Gallus_gallus.GRCg6a)

10: 4718420-4718478 [-] UCSC Ensembl

Seed

GAUAUGU

Precursor
(pre-Mir +30nt flank)

UCUGGAUGUCUUUUUCUGCAGGACUCUGUGUGAUAUGUUUGAUAUAUUAGGUUGUUAUUUAAUCCAACUAUAUAUCAAACAUAUUCCUACAGUGUCCUGCCCUGUCUCCGGGGGUUUUA

Get precursor sequence

Structure

        10          20        30         40        50         
UCUGGAUGUCUUUUUCU--       U     U-|               UA     UUAU 
                   GCAGGAC CUGUG  GAUAUGUUUGAUAUAU  GGUUG    U
                   CGUCCUG GACAU  UUAUACAAACUAUAUA  UCAAC    U
AUUUUGGGGGCCUCUGUCC       U     CC^               --     CUAA 
       110       100        90        80        70          60

Deep sequencing

Go to detailed chart

Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-190-P1_5p

mirBase accession

MIMAT0001155

Sequence

0- UGAUAUGUUUGAUAUAUUAGGUUG -24

Get sequence

Proposed targets

TargetScanVert: gga-miR-190a-5p
miRDB: MIMAT0001155

Star sequence

Gga-Mir-190-P1_3p*

mirBase accession

MIMAT0026525

Sequence

36- ACUAUAUAUCAAACAUAUUCCUA -59

Get sequence

Proposed targets

TargetScanVert: gga-miR-190a-3p
miRDB: MIMAT0026525