MirGeneDB 3.0

MirGeneDB ID

Cli-Mir-1416

Family name MIR-1416 (all species)
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-1416
Paralogues
Orthologues Ami-Mir-1416  Cpi-Mir-1416  Gga-Mir-1416  Oan-Mir-1416  Tgu-Mir-1416 
Node of Origin (locus) Amniota
Node of Origin (family) Amniota
Genome context
(colLiv2)
scaffold148: 1182294-1182352 [-]
Seed CCUUAAC
Precursor
(pre-Mir +30nt flank)
CACUUCAUGAAAGGUGGGGUUGACUCUCUUUCCUUAACUCAUGCCGCUGUGCCUUUUUAUUUGUUUCACAAUUGUGUGAGUUGAGUACAGAGUGUCAGUCCAGCCCCGCAUCACCCCAU
Get precursor sequence
Structure
        10          20        30        40        50         
CACUUCAUGAAAGGUGG-  -|    U    UUC            CGC    CCUUUUU 
                  GG UUGAC CUCU   CUUAACUCAUGC   UGUG       \
                  CC GACUG GAGA   GAGUUGAGUGUG   ACAC       A
UACCCCACUACGCCCCGA  U^    U    CAU            UUA    UUUGUUU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-1416_5p

mirBase accessionMIMAT0038676
Sequence
0- UCCUUAACUCAUGCCGCUGUGC -22
Get sequence
Star sequence

Cli-Mir-1416_3p*

mirBase accessionMIMAT0038677
Sequence
37- ACAAUUGUGUGAGUUGAGUACA -59
Get sequence