| MirGeneDB ID | Cli-Mir-1416 |
|---|
| Family name |
MIR-1416 (all species) |
|---|
| Seed |
CCUUAAC |
|---|
| Species |
Rock pigeon (Columba livia) |
|---|
| MiRBase ID |
cli-mir-1416
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Ami-Mir-1416
Cpi-Mir-1416
Gga-Mir-1416
Oan-Mir-1416
Tgu-Mir-1416
|
|---|
| Node of Origin (locus) |
Amniota
|
|---|
| Node of Origin (family) |
Amniota
|
|---|
Genome context
(colLiv2) |
scaffold148: 1182294-1182352 [-]
|
|---|
Precursor
(pre-Mir +30nt flank) |
CACUUCAUGAAAGGUGGGGUUGACUCUCUUUCCUUAACUCAUGCCGCUGUGCCUUUUUAUUUGUUUCACAAUUGUGUGAGUUGAGUACAGAGUGUCAGUCCAGCCCCGCAUCACCCCAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CACUUCAUGAAAGGUGG- -| U UUC CGC CCUUUUU
GG UUGAC CUCU CUUAACUCAUGC UGUG \
CC GACUG GAGA GAGUUGAGUGUG ACAC A
UACCCCACUACGCCCCGA U^ U CAU UUA UUUGUUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Cli-Mir-1416_5p |
| mirBase accession | MIMAT0038676 |
|---|
| Sequence |
0- UCCUUAACUCAUGCCGCUGUGC -22
Get sequence
|
|---|
| Star sequence |
Cli-Mir-1416_3p* |
| mirBase accession | MIMAT0038677 |
|---|
| Sequence |
37- ACAAUUGUGUGAGUUGAGUACA -59
Get sequence
|
|---|
