MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-1416

Family name MIR-1416 (all species)
Seed CCUUAAC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-1416
Paralogues
Orthologues Cli-Mir-1416  Cpi-Mir-1416  Gga-Mir-1416  Oan-Mir-1416  Tgu-Mir-1416 
Node of Origin (locus) Amniota
Node of Origin (family) Amniota
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017713772.1: 28059847-28059906 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AGGAAAUCAAAAGUGAUGGCUGACACUCCUUCCUUAACUCAUACCGCUGUGCCUGCCUUCUUUCUUUCACAAUUGUGUGAGUUGAGUUCAGAGUGUCAGUCCAACCCUGCUUUGCUCCAA
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Structure
        10          20        30        40        50         
AGGAAAUCAAAAGUGAU--|          CUUC            CGC    CCUGCCU 
                   GGCUGACACUC    CUUAACUCAUAC   UGUG       U
                   CUGACUGUGAG    GAGUUGAGUGUG   ACAC       C
AACCUCGUUUCGUCCCAAC^          ACUU            UUA    UUUCUUU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ami-Mir-1416_5p

mirBase accessionMIMAT0038316
Sequence
0- UCCUUAACUCAUACCGCUGUGC -22
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Star sequence

Ami-Mir-1416_3p* (predicted)

mirBase accessionNone
Sequence
38- ACAAUUGUGUGAGUUGAGUUCA -60
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