| MirGeneDB ID | Cpi-Mir-1416 |
|---|
| Family name |
MIR-1416 (all species) |
|---|
| Species |
Western painted turtle (Chrysemys picta bellii) |
|---|
| MiRBase ID |
cpi-mir-1416
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Ami-Mir-1416
Cli-Mir-1416
Gga-Mir-1416
Oan-Mir-1416
Tgu-Mir-1416
|
|---|
| Node of Origin (locus) |
Amniota
|
|---|
| Node of Origin (family) |
Amniota
|
|---|
Genome context
(chrPic1) |
JH584686: 9325225-9325285 [-]
UCSC
Ensembl
|
|---|
| Seed |
CCUUAAC |
|---|
Precursor
(pre-Mir +30nt flank) |
ACCAGGAAAUUAAAAGUGAUGGAUGACACCUCCUUAACUCAUGCCGCUGUGCCUUUCACCCCCACUCCCACAAUUGUAUGAGUUGAGUACAGAGUAUCAGACUAACACUGCUUGGCCCCCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACCAGGAAAUUAAAAGUGAU A- C - C--| CGC CCUUUCAC
GG UGA AC CU CUUAACUCAUGC UGUG \
UC ACU UG GA GAGUUGAGUAUG ACAC C
ACCCCCGGUUCGUCACAA-- AG A A CAU^ UUA CCUCACCC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Cpi-Mir-1416_5p (predicted) |
| mirBase accession | MIMAT0037916 |
|---|
| Sequence |
0- UCCUUAACUCAUGCCGCUGUGC -22
Get sequence
|
|---|
| Star sequence |
Cpi-Mir-1416_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
39- ACAAUUGUAUGAGUUGAGUACA -61
Get sequence
|
|---|
