MirGeneDB ID | Cli-Mir-551-P1 |
Family name |
MIR-551 (all species) |
Species |
Rock pigeon (Columba livia) |
MiRBase ID |
cli-mir-551a
|
Paralogues |
Cli-Mir-551-P2
|
Orthologues |
Ami-Mir-551-P1
Cfa-Mir-551-P1
Cja-Mir-551-P1
Cmi-Mir-551-P1
Cpi-Mir-551-P1
Eca-Mir-551-P1
Gja-Mir-551-P1
Hsa-Mir-551-P1
Laf-Mir-551-P1
Lch-Mir-551-P1
Loc-Mir-551-P1
Mdo-Mir-551-P1
Mml-Mir-551-P1
Mmr-Mir-551-P1
Neu-Mir-551-P1
Pab-Mir-551-P1
Pbv-Mir-551-P1
Pma-Mir-551-o1
Sha-Mir-551-P1
Spt-Mir-551-P1
Xla-Mir-551-P1a
Xla-Mir-551-P1b
Xtr-Mir-551-P1
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (colLiv2) |
scaffold693: 3837059-3837117 [-]
|
Seed |
CGACCCA |
Precursor (pre-Mir +30nt flank) |
GCUCCGUGACGUCCGCUGUGCGUGACCUUGGAAAUCAAGUGUAGGUGGAGCCUGUGGCAGCGAUCAAGGCGACCCACACUUGGUUUCAAGGGUCCGCAGGGCAGCCUGGGGCACGUCCU
Get precursor sequence
|
Structure | 10 20 30 40 50
GCUCCGUGACGUCCGCUG---| U G A GGA GUGGCA
UGCG GACCUU GAAAUCAAGUGU GGU GCCU \
ACGC CUGGGA CUUUGGUUCACA CCA CGGA G
UCCUGCACGGGGUCCGACGGG^ - A C G-- ACUAGC
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), UGUG in loop |
Tissue expression
|
|
Star sequence |
Cli-Mir-551-P1_5p* |
mirBase accession | MIMAT0038662 |
Sequence |
0- GAAAUCAAGUGUAGGUGGAGCCU -23
Get sequence
|
Mature sequence |
Cli-Mir-551-P1_3p |
mirBase accession | MIMAT0038663 |
Sequence |
38- GCGACCCACACUUGGUUUCAA -59
Get sequence
|