Mir-551-P1

MirGeneDB ID

Xtr-Mir-551-P1

Family name

MIR-551 (all species)

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

Paralogues

Xtr-Mir-551-P2

Orthologues

Ami-Mir-551-P1 Cfa-Mir-551-P1 Cja-Mir-551-P1 Cli-Mir-551-P1 Cmi-Mir-551-P1 Cpi-Mir-551-P1 Eca-Mir-551-P1 Gja-Mir-551-P1 Hsa-Mir-551-P1 Laf-Mir-551-P1 Lch-Mir-551-P1 Loc-Mir-551-P1 Mdo-Mir-551-P1 Mml-Mir-551-P1 Mmr-Mir-551-P1 Neu-Mir-551-P1 Pab-Mir-551-P1 Pbv-Mir-551-P1 Pma-Mir-551-o1 Sha-Mir-551-P1 Spt-Mir-551-P1 Xla-Mir-551-P1a Xla-Mir-551-P1b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chr7: 93453650-93453707 [+] UCSC Ensembl

Seed

AAACCAA

Precursor
(pre-Mir +30nt flank)

UAAUUUAGAACAAAAGCUUGUUUGACCUUGGAAACCAAGAGUGGGUUGGGCCUGUUAGAUCACAUAGGCGACCCAUACUUGGUUUCAAGGGUUAGCAGGAAUAUCAAAAGCAGGCCUG

Get precursor sequence

Structure

        10           20        30        40        50         
UAAUUUAGAACAAAAGC---|    U      G         A       GG   UGUUAG 
                    UUGUU GACCUU GAAACCAAG GUGGGUU  GCC      A
                    GACGA UUGGGA CUUUGGUUC UACCCAG  CGG      U
GUCCGGACGAAAACUAUAAG^    -      A         A       --   AUACAC 
      110       100         90        80        70          60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UGUG in loop

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-551-P1_5p

mirBase accession

None

Sequence

0- GAAACCAAGAGUGGGUUGGGCC -22

Get sequence

Star sequence

Xtr-Mir-551-P1_3p* (predicted)

mirBase accession

None

Sequence

37- GCGACCCAUACUUGGUUUCAA -58

Get sequence