MirGeneDB 2.1
MirGeneDB ID

Xtr-Mir-551-P1

Family name MIR-551 (all species)
Seed AAACCAA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID
Paralogues Xtr-Mir-551-P2 
Orthologues Ami-Mir-551-P1  Bta-Mir-551-P1  Cfa-Mir-551-P1  Cli-Mir-551-P1  Cmi-Mir-551-P1  Cpi-Mir-551-P1  Gja-Mir-551-P1  Hsa-Mir-551-P1  Lch-Mir-551-P1  Loc-Mir-551-P1  Mdo-Mir-551-P1  Mml-Mir-551-P1  Pbv-Mir-551-P1  Pma-Mir-551-o1  Sha-Mir-551-P1  Spt-Mir-551-P1  Xla-Mir-551-P1a  Xla-Mir-551-P1b 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr7: 93453650-93453707 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAAUUUAGAACAAAAGCUUGUUUGACCUUGGAAACCAAGAGUGGGUUGGGCCUGUUAGAUCACAUAGGCGACCCAUACUUGGUUUCAAGGGUUAGCAGGAAUAUCAAAAGCAGGCCUG
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Structure
        10           20        30        40        50         
UAAUUUAGAACAAAAGC---|    U      G         A       GG   UGUUAG 
                    UUGUU GACCUU GAAACCAAG GUGGGUU  GCC      A
                    GACGA UUGGGA CUUUGGUUC UACCCAG  CGG      U
GUCCGGACGAAAACUAUAAG^    -      A         A       --   AUACAC 
      110       100         90        80        70          60
Deep sequencing
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3' NTU Unknown
MotifsUGUG in loop
Tissue expression
-   +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-551-P1_5p
mirBase accessionNone
Sequence 
0- GAAACCAAGAGUGGGUUGGGCC -22
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Star sequence

Xtr-Mir-551-P1_3p* (predicted)
mirBase accessionNone
Sequence 
37- GCGACCCAUACUUGGUUUCAA -58
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