| MirGeneDB ID | Spt-Mir-551-P1 |
|---|---|
| Family name | MIR-551 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-551-P2 |
| Orthologues | Ami-Mir-551-P1 Cfa-Mir-551-P1 Cja-Mir-551-P1 Cli-Mir-551-P1 Cmi-Mir-551-P1 Cpi-Mir-551-P1 Eca-Mir-551-P1 Gja-Mir-551-P1 Hsa-Mir-551-P1 Laf-Mir-551-P1 Lch-Mir-551-P1 Loc-Mir-551-P1 Mdo-Mir-551-P1 Mml-Mir-551-P1 Mmr-Mir-551-P1 Neu-Mir-551-P1 Pab-Mir-551-P1 Pbv-Mir-551-P1 Pma-Mir-551-o1 Sha-Mir-551-P1 Xla-Mir-551-P1a Xla-Mir-551-P1b Xtr-Mir-551-P1 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01004358.1: 6054320-6054379 [+] UCSC Ensembl |
| Seed | CGACCCA |
| Precursor (pre-Mir +30nt flank) |
AUACCUGGAUGCUUCCUGUAUAUGACCUUGGAAAUCAAGAAUGGGUGGAACCUGUUACAGUAAUGCUAGGCGACCCAUACUUGGUUUCAAGGGUUGGCGGGGAAUCGGCAGAAGAAACUGGet precursor sequence |
| Structure | 10 20 30 40 50 60 AUACCUGGAUGCUUCCUGUAUAU--| G A GGAA GUUACA GACCUU GAAAUCAAG AUGGGU CCU G UUGGGA CUUUGGUUC UACCCA GGA U GUCAAAGAAGACGGCUAAGGGGCGG^ A A GC-- UCGUAA . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Spt-Mir-551-P1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GAAAUCAAGAAUGGGUGGAACCU -23
Get sequence
|
| Mature sequence | Spt-Mir-551-P1_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- GCGACCCAUACUUGGUUUCAA -60
Get sequence
|
