MirGeneDB 2.1

MirGeneDB ID

Spt-Mir-551-P1

Family name MIR-551 (all species)
Seed CGACCCA
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-551-P2 
Orthologues Ami-Mir-551-P1  Bta-Mir-551-P1  Cfa-Mir-551-P1  Cli-Mir-551-P1  Cmi-Mir-551-P1  Cpi-Mir-551-P1  Gja-Mir-551-P1  Hsa-Mir-551-P1  Lch-Mir-551-P1  Loc-Mir-551-P1  Mdo-Mir-551-P1  Mml-Mir-551-P1  Pbv-Mir-551-P1  Pma-Mir-551-o1  Sha-Mir-551-P1  Xla-Mir-551-P1a  Xla-Mir-551-P1b  Xtr-Mir-551-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01004358.1: 6054320-6054379 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUACCUGGAUGCUUCCUGUAUAUGACCUUGGAAAUCAAGAAUGGGUGGAACCUGUUACAGUAAUGCUAGGCGACCCAUACUUGGUUUCAAGGGUUGGCGGGGAAUCGGCAGAAGAAACUG
Get precursor sequence
Structure
        10        20          30        40        50        60
AUACCUGGAUGCUUCCUGUAUAU--|     G         A      GGAA   GUUACA 
                         GACCUU GAAAUCAAG AUGGGU    CCU      G
                         UUGGGA CUUUGGUUC UACCCA    GGA      U
GUCAAAGAAGACGGCUAAGGGGCGG^     A         A      GC--   UCGUAA 
.       110       100        90        80          70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Star sequence

Spt-Mir-551-P1_5p* (predicted)

mirBase accessionNone
Sequence
0- GAAAUCAAGAAUGGGUGGAACCU -23
Get sequence
Mature sequence

Spt-Mir-551-P1_3p (predicted)

mirBase accessionNone
Sequence
39- GCGACCCAUACUUGGUUUCAA -60
Get sequence