Mir-551-o1

MirGeneDB ID

Pma-Mir-551-o1

Family name

MIR-551 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-551

Paralogues

Orthologues

Ami-Mir-551-P1 Cfa-Mir-551-P1 Cja-Mir-551-P1 Cli-Mir-551-P1 Cmi-Mir-551-P1 Cpi-Mir-551-P1 Eca-Mir-551-P1 Gja-Mir-551-P1 Hsa-Mir-551-P1 Laf-Mir-551-P1 Lch-Mir-551-P1 Loc-Mir-551-P1 Mdo-Mir-551-P1 Mml-Mir-551-P1 Mmr-Mir-551-P1 Neu-Mir-551-P1 Pab-Mir-551-P1 Pbv-Mir-551-P1 Sha-Mir-551-P1 Spt-Mir-551-P1 Xla-Mir-551-P1a Xla-Mir-551-P1b Xtr-Mir-551-P1

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046107.1: 2594938-2594998 [+] UCSC Ensembl

Seed

CGACCCA

Precursor
(pre-Mir +30nt flank)

GUGCGCUGGUGGAAUUAUUCUGAUGCCUCCGAAAUCAAGUGUGGGUAUGACCUUGUUGUUUUAAUCCUAGGCGACCCAUACUUGGUUUCAAAGGACUGCAGAAAAUGGCAUCUAUGUAUUC

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Structure

        10         20         30        40        50        60 
GUGCGCUGGUGGAAUUA-     AUG-|  CC                A  A   UGUUGUU 
                  UUCUG    CCU  GAAAUCAAGUGUGGGU UG CCU       \
                  AAGAC    GGA  CUUUGGUUCAUACCCA GC GGA       U
CUUAUGUAUCUACGGUAA     GUCA^  AA                -  -   UCCUAAU 
 .       110       100        90        80          70

Deep sequencing

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3' NTU

Yes

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-551-o1_5p* (predicted)

mirBase accession

None

Sequence

0- GAAAUCAAGUGUGGGUAUGACCU -23

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Mature sequence

Pma-Mir-551-o1_3p

mirBase accession

MIMAT0019558

Sequence

40- GCGACCCAUACUUGGUUUCAA -61

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