| MirGeneDB ID | Loc-Mir-551-P1 |
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| Family name |
MIR-551 (all species) |
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| Seed |
AAGUCAA |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
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| Paralogues |
Loc-Mir-551-P2
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| Orthologues |
Ami-Mir-551-P1
Bta-Mir-551-P1
Cfa-Mir-551-P1
Cli-Mir-551-P1
Cmi-Mir-551-P1
Cpi-Mir-551-P1
Gja-Mir-551-P1
Hsa-Mir-551-P1
Lch-Mir-551-P1
Mdo-Mir-551-P1
Mml-Mir-551-P1
Pbv-Mir-551-P1
Pma-Mir-551-o1
Sha-Mir-551-P1
Spt-Mir-551-P1
Xla-Mir-551-P1a
Xla-Mir-551-P1b
Xtr-Mir-551-P1
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| Node of Origin (locus) |
Vertebrata
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| Node of Origin (family) |
Vertebrata
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Genome context
(LepOcu1) |
LG25: 8460322-8460381 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGACUCUGGGACCCUCUCAGCCAGACUCCCGAAGUCAAGCGUGGGUGGAGCCUGUGAGACAGCCGCCAGGCGACCCAUUCUUGGUUUCAGGGGUCACUGGGGCUGCCAAGUUCACCCCCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GGACUCUGGGACCCUCUCAG --| C GU C GGA GUGAGA
CCA GACUCC GAA CAAG GUGGGU GCCU C
GGU CUGGGG CUU GUUC UACCCA CGGA A
ACCCCCACUUGAACCGUCGG CA^ A UG U G-- CCGCCG
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
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| Motifs | UGUG in loop |
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Tissue expression
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| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Mature sequence |
Loc-Mir-551-P1_5p |
| mirBase accession | None |
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| Sequence |
0- GAAGUCAAGCGUGGGUGGAGCCU -23
Get sequence
|
|---|
| Co-mature sequence |
Loc-Mir-551-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
39- GCGACCCAUUCUUGGUUUCAG -60
Get sequence
|
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