MirGeneDB ID | Ami-Mir-551-P1 |
Family name |
MIR-551 (all species) |
Seed |
AAAUCAA |
Species |
American alligator (Alligator mississippiensis) |
MiRBase ID |
ami-mir-551-1
|
Paralogues |
Ami-Mir-551-P2
|
Orthologues |
Bta-Mir-551-P1
Cfa-Mir-551-P1
Cli-Mir-551-P1
Cmi-Mir-551-P1
Cpi-Mir-551-P1
Gja-Mir-551-P1
Hsa-Mir-551-P1
Lch-Mir-551-P1
Loc-Mir-551-P1
Mdo-Mir-551-P1
Mml-Mir-551-P1
Pbv-Mir-551-P1
Pma-Mir-551-o1
Sha-Mir-551-P1
Spt-Mir-551-P1
Xla-Mir-551-P1a
Xla-Mir-551-P1b
Xtr-Mir-551-P1
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017711487.1: 2467680-2467739 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
UCAAGGGACACAUUUUCUGCUUUAACCUUGGAAAUCAAGGAUGGGUGAAGCCUGUUGGAAUAACUCUAGGCGACCCAUACUUGGUUUCAAGGGUCAGCAGGGAUUCUGCAGAGGAAUGAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCAAGGGACACAUUUUC----| UUA G G GAA GUUGGA
UGCU ACCUU GAAAUCAAG AUGGGU GCCU A
ACGA UGGGA CUUUGGUUC UACCCA CGGA U
AAGUAAGGAGACGUCUUAGGG^ C-- A A G-- UCUCAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ami-Mir-551-P1_5p |
mirBase accession | MIMAT0038303 |
Sequence |
0- GAAAUCAAGGAUGGGUGAAGCCU -23
Get sequence
|
Co-mature sequence |
Ami-Mir-551-P1_3p |
mirBase accession | MIMAT0038304 |
Sequence |
39- GCGACCCAUACUUGGUUUCAA -60
Get sequence
|