MirGeneDB ID | Xla-Mir-551-P1a |
Family name |
MIR-551 (all species) |
Seed |
CGACCCA |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-551-P1b
Xla-Mir-551-P2a
Xla-Mir-551-P2b
|
Orthologues |
Ami-Mir-551-P1
Bta-Mir-551-P1
Cfa-Mir-551-P1
Cli-Mir-551-P1
Cmi-Mir-551-P1
Cpi-Mir-551-P1
Gja-Mir-551-P1
Hsa-Mir-551-P1
Lch-Mir-551-P1
Loc-Mir-551-P1
Mdo-Mir-551-P1
Mml-Mir-551-P1
Pbv-Mir-551-P1
Pma-Mir-551-o1
Sha-Mir-551-P1
Spt-Mir-551-P1
Xtr-Mir-551-P1
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030736.1: 95971706-95971763 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUUUAAAAAAAAAAAGCUUGUUUGACCUUGGAAGUCAAGGUUGGGUUGGGCCUGUUAGAUUACAUAGGCGACCCAUACUUGGUUUCAAGGGUUAGCAGGAAUAUCAAAAGCAGGCCUG
Get precursor sequence
|
Structure | 10 20 30 40 50
AUUUAAAAAAAAAAAGC---| U G GU GU GG GUUAG
UUGUU GACCUU GAA CAAG UGGGUU GCCU A
GACGA UUGGGA CUU GUUC ACCCAG CGGA U
GUCCGGACGAAAACUAUAAG^ - A UG AU -- UACAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Xla-Mir-551-P1a_5p* |
mirBase accession | None |
Sequence |
0- GAAGUCAAGGUUGGGUUGGGCCU -23
Get sequence
|
Mature sequence |
Xla-Mir-551-P1a_3p |
mirBase accession | None |
Sequence |
37- GCGACCCAUACUUGGUUUCAA -58
Get sequence
|