MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-551-P1a

Family name MIR-551 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-551-P1b  Xla-Mir-551-P2a  Xla-Mir-551-P2b 
Orthologues Ami-Mir-551-P1  Cfa-Mir-551-P1  Cja-Mir-551-P1  Cli-Mir-551-P1  Cmi-Mir-551-P1  Cpi-Mir-551-P1  Eca-Mir-551-P1  Gja-Mir-551-P1  Hsa-Mir-551-P1  Laf-Mir-551-P1  Lch-Mir-551-P1  Loc-Mir-551-P1  Mdo-Mir-551-P1  Mml-Mir-551-P1  Mmr-Mir-551-P1  Neu-Mir-551-P1  Pab-Mir-551-P1  Pbv-Mir-551-P1  Pma-Mir-551-o1  Sha-Mir-551-P1  Spt-Mir-551-P1  Xtr-Mir-551-P1 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030736.1: 95971706-95971763 [+] UCSC Ensembl
Seed CGACCCA
Precursor
(pre-Mir +30nt flank)		 
AUUUAAAAAAAAAAAGCUUGUUUGACCUUGGAAGUCAAGGUUGGGUUGGGCCUGUUAGAUUACAUAGGCGACCCAUACUUGGUUUCAAGGGUUAGCAGGAAUAUCAAAAGCAGGCCUG
Get precursor sequence
Structure
        10           20        30        40        50         
AUUUAAAAAAAAAAAGC---|    U      G   GU    GU      GG    GUUAG 
                    UUGUU GACCUU GAA  CAAG  UGGGUU  GCCU     A
                    GACGA UUGGGA CUU  GUUC  ACCCAG  CGGA     U
GUCCGGACGAAAACUAUAAG^    -      A   UG    AU      --    UACAU 
      110       100         90        80        70          60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Eg Em Em He Ki Re St St
Star sequence

Xla-Mir-551-P1a_5p*
mirBase accessionNone
Sequence 
0- GAAGUCAAGGUUGGGUUGGGCCU -23
Get sequence
Mature sequence

Xla-Mir-551-P1a_3p
mirBase accessionNone
Sequence 
37- GCGACCCAUACUUGGUUUCAA -58
Get sequence