| MirGeneDB ID | Cmi-Mir-551-P1 |
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| Family name |
MIR-551 (all species) |
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| Seed |
CGACCCA |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
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| Paralogues |
Cmi-Mir-551-P2
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| Orthologues |
Ami-Mir-551-P1
Bta-Mir-551-P1
Cfa-Mir-551-P1
Cli-Mir-551-P1
Cpi-Mir-551-P1
Gja-Mir-551-P1
Hsa-Mir-551-P1
Lch-Mir-551-P1
Loc-Mir-551-P1
Mdo-Mir-551-P1
Mml-Mir-551-P1
Pbv-Mir-551-P1
Pma-Mir-551-o1
Sha-Mir-551-P1
Spt-Mir-551-P1
Xla-Mir-551-P1a
Xla-Mir-551-P1b
Xtr-Mir-551-P1
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| Node of Origin (locus) |
Vertebrata
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635947.1: 1457682-1457741 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCCUGAUACCAACGUUACCCUUUGACCCCCGAAAUCAAGCAUGGGUGAAGCCCGUGAUAUGUUUGCUGGGCGACCCAUUCUUGUUUUCUGCGGUGGUUGGUUGAAACGCCUGCCAAUUGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UCCUGAUACCAACGUUACCCU UG - - -| U C GAA GUGAUA
U ACC CC C GAAA CAAG AUGGGU GCCC U
G UGG GG G CUUU GUUC UACCCA CGGG G
GGUUAACCGUCCGCAAAGUU- GU U C U^ U U G-- UCGUUU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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| Star sequence |
Cmi-Mir-551-P1_5p* |
| mirBase accession | None |
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| Sequence |
0- GAAAUCAAGCAUGGGUGAAGCCC -23
Get sequence
|
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| Mature sequence |
Cmi-Mir-551-P1_3p |
| mirBase accession | None |
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| Sequence |
39- GCGACCCAUUCUUGUUUUCUG -60
Get sequence
|
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