MirGeneDB ID | Cpi-Mir-551-P1 |
Family name |
MIR-551 (all species) |
Seed |
CGACCCA |
Species |
Western painted turtle (Chrysemys picta bellii) |
MiRBase ID |
cpi-mir-551-1
|
Paralogues |
Cpi-Mir-551-P2
|
Orthologues |
Ami-Mir-551-P1
Bta-Mir-551-P1
Cfa-Mir-551-P1
Cli-Mir-551-P1
Cmi-Mir-551-P1
Gja-Mir-551-P1
Hsa-Mir-551-P1
Lch-Mir-551-P1
Loc-Mir-551-P1
Mdo-Mir-551-P1
Mml-Mir-551-P1
Pbv-Mir-551-P1
Pma-Mir-551-o1
Sha-Mir-551-P1
Spt-Mir-551-P1
Xla-Mir-551-P1a
Xla-Mir-551-P1b
Xtr-Mir-551-P1
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (chrPic1) |
JH584691: 8954448-8954507 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUCCUGGGUACUUUCCUGUAUAUGACCUUGGAAAUCAAGAAUGGGUGGAGCCUGUUGAAUUAAUUCUAGGCGACCCAUACUUGGUUUCAAGGGUCAGCAGGGAAUCUACAGAAGAAACGC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUCCUGGGUACUUUCCUGUAUA--| G A GGA GUUGAA
UGACCUU GAAAUCAAG AUGGGU GCCU U
ACUGGGA CUUUGGUUC UACCCA CGGA U
CGCAAAGAAGACAUCUAAGGGACG^ A A G-- UCUUAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Cpi-Mir-551-P1_5p* |
mirBase accession | MIMAT0037903 |
Sequence |
0- GAAAUCAAGAAUGGGUGGAGCCU -23
Get sequence
|
Mature sequence |
Cpi-Mir-551-P1_3p |
mirBase accession | MIMAT0037904 |
Sequence |
39- GCGACCCAUACUUGGUUUCAA -60
Get sequence
|