MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-551-P2

Family name MIR-551 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID
Paralogues Xtr-Mir-551-P1 
Orthologues Aca-Mir-551-P2  Ami-Mir-551-P2  Bta-Mir-551-P2  Cfa-Mir-551-P2  Cja-Mir-551-P2  Cli-Mir-551-P2  Cmi-Mir-551-P2  Cpi-Mir-551-P2  Cpo-Mir-551-P2  Dno-Mir-551-P2  Dre-Mir-551-P2  Eca-Mir-551-P2  Ete-Mir-551-P2  Gga-Mir-551-P2  Gja-Mir-551-P2  Gmo-Mir-551-P2  Hsa-Mir-551-P2  Laf-Mir-551-P2  Lch-Mir-551-P2  Loc-Mir-551-P2  Mal-Mir-551-P2  Mdo-Mir-551-P2  Mml-Mir-551-P2  Mmr-Mir-551-P2  Mmu-Mir-551-P2  Mun-Mir-551-P2  Neu-Mir-551-P2  Oan-Mir-551-P2  Ocu-Mir-551-P2  Pab-Mir-551-P2  Pbv-Mir-551-P2  Rno-Mir-551-P2  Sha-Mir-551-P2  Spt-Mir-551-P2  Sto-Mir-551-P2  Tgu-Mir-551-P2  Xla-Mir-551-P2a  Xla-Mir-551-P2b 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr5: 101175018-101175078 [-] UCSC Ensembl
Seed CGACCCA
Precursor
(pre-Mir +30nt flank)		 
UAAUCACAGGGACUGAUCACUCUGACCUUAGAAAUCAAGCUUGGGUUAGACCUGGUUCUUAUACACUGAGGCGACCCAUACUUGGUUUCUGAGGCUGAAGUGCUAUAGCUGUGAAUGCACA
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Structure
        10          20        30        40        50          
UAAUCACAGGGACUGAU--|   CU A              CU      AGACCUGGUUCU 
                   CACU  G CCUUAGAAAUCAAG  UGGGUU            \
                   GUGA  U GGAGUCUUUGGUUC  ACCCAG            U
ACACGUAAGUGUCGAUAUC^   AG C              AU      CGGAGUCACAUA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
- +
An Br Em Em He Ve
Star sequence

Xtr-Mir-551-P2_5p*
mirBase accessionNone
Sequence 
0- GAAAUCAAGCUUGGGUUAGAC -21
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Mature sequence

Xtr-Mir-551-P2_3p
mirBase accessionNone
Sequence 
40- GCGACCCAUACUUGGUUUCUG -61
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