MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-551-P2

Family name MIR-551 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-551-P1 
Orthologues Aca-Mir-551-P2  Ami-Mir-551-P2  Bta-Mir-551-P2  Cfa-Mir-551-P2  Cja-Mir-551-P2  Cli-Mir-551-P2  Cmi-Mir-551-P2  Cpi-Mir-551-P2  Cpo-Mir-551-P2  Dno-Mir-551-P2  Dre-Mir-551-P2  Eca-Mir-551-P2  Ete-Mir-551-P2  Gga-Mir-551-P2  Gmo-Mir-551-P2  Hsa-Mir-551-P2  Laf-Mir-551-P2  Lch-Mir-551-P2  Loc-Mir-551-P2  Mal-Mir-551-P2  Mdo-Mir-551-P2  Mml-Mir-551-P2  Mmr-Mir-551-P2  Mmu-Mir-551-P2  Mun-Mir-551-P2  Neu-Mir-551-P2  Oan-Mir-551-P2  Ocu-Mir-551-P2  Pab-Mir-551-P2  Pbv-Mir-551-P2  Rno-Mir-551-P2  Sha-Mir-551-P2  Spt-Mir-551-P2  Sto-Mir-551-P2  Tgu-Mir-551-P2  Xla-Mir-551-P2a  Xla-Mir-551-P2b  Xtr-Mir-551-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015161952.1: 707120-707180 [+]
Seed CGACCCA
Precursor
(pre-Mir +30nt flank)		 
AGCUCUUCUUCGGCAACUUCAUAGGCUCUAGAAAUCAAGGUUGGGUGAGACCUCGUGAGCAAAGGAGAAGGCGACCCAUACUUGGUUUCAGGAGCUGUGAGGAGUGAGUCAUCUUUAUGUA
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Structure
        10           20        30        40        50        60 
AGCUCUUCUUCGGCAAC---|      G    A         GU     GAGA   CGUGAGC 
                    UUCAUAG CUCU GAAAUCAAG  UGGGU    CCU       \
                    GAGUGUC GAGG CUUUGGUUC  ACCCA    GGA       A
AUGUAUUUCUACUGAGUGAG^      -    A         AU     GC--   AGAGGAA 
 .       110       100         90        80          70
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
- +
To
Star sequence

Gja-Mir-551-P2_5p*
mirBase accessionNone
Sequence 
0- GAAAUCAAGGUUGGGUGAGACCU -23
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Mature sequence

Gja-Mir-551-P2_3p
mirBase accessionNone
Sequence 
40- GCGACCCAUACUUGGUUUCAG -61
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