MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-551-P2

Family name MIR-551 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-551b
Paralogues Eca-Mir-551-P1 
Orthologues Aca-Mir-551-P2  Ami-Mir-551-P2  Bta-Mir-551-P2  Cfa-Mir-551-P2  Cja-Mir-551-P2  Cli-Mir-551-P2  Cmi-Mir-551-P2  Cpi-Mir-551-P2  Cpo-Mir-551-P2  Dno-Mir-551-P2  Dre-Mir-551-P2  Ete-Mir-551-P2  Gga-Mir-551-P2  Gja-Mir-551-P2  Gmo-Mir-551-P2  Hsa-Mir-551-P2  Laf-Mir-551-P2  Lch-Mir-551-P2  Loc-Mir-551-P2  Mal-Mir-551-P2  Mdo-Mir-551-P2  Mml-Mir-551-P2  Mmr-Mir-551-P2  Mmu-Mir-551-P2  Mun-Mir-551-P2  Neu-Mir-551-P2  Oan-Mir-551-P2  Ocu-Mir-551-P2  Pab-Mir-551-P2  Pbv-Mir-551-P2  Rno-Mir-551-P2  Sha-Mir-551-P2  Spt-Mir-551-P2  Sto-Mir-551-P2  Tgu-Mir-551-P2  Xla-Mir-551-P2a  Xla-Mir-551-P2b  Xtr-Mir-551-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009166.1: 11547230-11547289 [+] UCSC Ensembl
Seed CGACCCA
Precursor
(pre-Mir +30nt flank)		 
AGGUCUGCCAGAUGUGCUCUCCUGGCCCAUGAAAUCAAGCGUGGGUGAGACCUGGUGCAGAACGGGAAGGCGACCCAUACUUGGUUUCAGAGGCUGUGAGAAUACCUACAGUUUUGAGAG
Get precursor sequence
Structure
        10          20        30        40        50        60
AGGUCUGCCAGAUGUGC--|   C     CA          CG     GAGA   GGUGCA 
                   UCUC UGGCC  UGAAAUCAAG  UGGGU    CCU      G
                   AGAG GUCGG  ACUUUGGUUC  ACCCA    GGA      A
GAGAGUUUUGACAUCCAUA^   U     AG          AU     GC--   AGGGCA 
.       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-551-P2_5p*
mirBase accessionNone
Sequence 
0- GAAAUCAAGCGUGGGUGAGACCU -23
Get sequence
Mature sequence

Eca-Mir-551-P2_3p
mirBase accessionMIMAT0013094
Sequence 
39- GCGACCCAUACUUGGUUUCAG -60
Get sequence