| MirGeneDB ID | Cpo-Mir-551-P2 |
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| Family name |
MIR-551 (all species) |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-551
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| Paralogues |
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| Orthologues |
Aca-Mir-551-P2
Ami-Mir-551-P2
Bta-Mir-551-P2
Cfa-Mir-551-P2
Cja-Mir-551-P2
Cli-Mir-551-P2
Cmi-Mir-551-P2
Cpi-Mir-551-P2
Dno-Mir-551-P2
Dre-Mir-551-P2
Eca-Mir-551-P2
Ete-Mir-551-P2
Gga-Mir-551-P2
Gja-Mir-551-P2
Gmo-Mir-551-P2
Hsa-Mir-551-P2
Laf-Mir-551-P2
Lch-Mir-551-P2
Loc-Mir-551-P2
Mal-Mir-551-P2
Mdo-Mir-551-P2
Mml-Mir-551-P2
Mmr-Mir-551-P2
Mmu-Mir-551-P2
Mun-Mir-551-P2
Neu-Mir-551-P2
Oan-Mir-551-P2
Ocu-Mir-551-P2
Pab-Mir-551-P2
Pbv-Mir-551-P2
Rno-Mir-551-P2
Sha-Mir-551-P2
Spt-Mir-551-P2
Sto-Mir-551-P2
Tgu-Mir-551-P2
Xla-Mir-551-P2a
Xla-Mir-551-P2b
Xtr-Mir-551-P2
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| Node of Origin (locus) |
Vertebrata
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| Node of Origin (family) |
Vertebrata
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Genome context
(cavPor3) |
scaffold_100: 1116239-1116298 [+]
UCSC
|
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| Seed |
CGACCCA |
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Precursor
(pre-Mir +30nt flank) |
UUAACUGCCCGACGUGCUCUUGUGGCCCAGGAAAUCAAGCGUGGGUGAGACCUGGUGCGGAAGGGGAAGGCGACCCAUACUUGGUUUCAGAGGCUGCAAGAAUACCUGCAUUUCUAAGGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UUAACUGCCCGACGUGC--| UG CAG CG GAGA GGUGCG
UCUUG GCC GAAAUCAAG UGGGU CCU G
AGAAC CGG CUUUGGUUC ACCCA GGA A
GGGAAUCUUUACGUCCAUA^ GU AGA AU GC-- AGGGGA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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| Star sequence |
Cpo-Mir-551-P2_5p* |
| mirBase accession | MIMAT0047347 |
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| Sequence |
0- GAAAUCAAGCGUGGGUGAGACCU -23
Get sequence
|
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| Mature sequence |
Cpo-Mir-551-P2_3p |
| mirBase accession | MIMAT0047348 |
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| Sequence |
39- GCGACCCAUACUUGGUUUCAG -60
Get sequence
|
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