| MirGeneDB ID | Lch-Mir-551-P2 |
|---|---|
| Family name | MIR-551 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-551-P1 |
| Orthologues | Aca-Mir-551-P2 Ami-Mir-551-P2 Bta-Mir-551-P2 Cfa-Mir-551-P2 Cja-Mir-551-P2 Cli-Mir-551-P2 Cmi-Mir-551-P2 Cpi-Mir-551-P2 Cpo-Mir-551-P2 Dno-Mir-551-P2 Dre-Mir-551-P2 Eca-Mir-551-P2 Ete-Mir-551-P2 Gga-Mir-551-P2 Gja-Mir-551-P2 Gmo-Mir-551-P2 Hsa-Mir-551-P2 Laf-Mir-551-P2 Loc-Mir-551-P2 Mal-Mir-551-P2 Mdo-Mir-551-P2 Mml-Mir-551-P2 Mmr-Mir-551-P2 Mmu-Mir-551-P2 Mun-Mir-551-P2 Neu-Mir-551-P2 Oan-Mir-551-P2 Ocu-Mir-551-P2 Pab-Mir-551-P2 Pbv-Mir-551-P2 Rno-Mir-551-P2 Sha-Mir-551-P2 Spt-Mir-551-P2 Sto-Mir-551-P2 Tgu-Mir-551-P2 Xla-Mir-551-P2a Xla-Mir-551-P2b Xtr-Mir-551-P2 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126697.1: 2232984-2233044 [-] Ensembl |
| Seed | CGACCCA |
| Precursor (pre-Mir +30nt flank) |
CUGUACCAGAGAGAGAUCCACAUUGCCCCAGAAAUCAAGGAUGGGUGAGACCUCGUAAUGAACGAUGAAGGCGACCCAUUCUUGGUUUCAGGGACCUUGGUGGCAUAACCAGUUCAGUUCCGet precursor sequence |
| Structure | 10 20 30 40 50 60 CUGUACCAGAGAGAGAU- AUUGC-| A GAGA CGUAAUG CCAC CCC GAAAUCAAGGAUGGGU CCU \ GGUG GGG CUUUGGUUCUUACCCA GGA A CCUUGACUUGACCAAUAC GUUCCA^ A GC-- AGUAGCA . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Lch-Mir-551-P2_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GAAAUCAAGGAUGGGUGAGACCU -23
Get sequence
|
| Mature sequence | Lch-Mir-551-P2_3p (predicted) |
| mirBase accession | None |
| Sequence |
40- GCGACCCAUUCUUGGUUUCAG -61
Get sequence
|
