MirGeneDB 2.1

MirGeneDB ID

Cli-Mir-875

Family name MIR-875 (all species)
Seed AUACCUC
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-875
Paralogues
Orthologues Aca-Mir-875  Ami-Mir-875  Bta-Mir-875  Cfa-Mir-875  Cpi-Mir-875  Ebu-Mir-875  Ete-Mir-875  Gja-Mir-875  Hsa-Mir-875  Mdo-Mir-875  Mml-Mir-875  Mmu-Mir-875  Mun-Mir-875  Oan-Mir-875  Ocu-Mir-875  Pbv-Mir-875  Pma-Mir-875  Rno-Mir-875  Sha-Mir-875  Spt-Mir-875 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)
scaffold1: 1574523-1574579 [+]
Clustered miRNAs
(< 50kb from Mir-875)
Mir-875 scaffold1: 1574523-1574579 [+]
Mir-599 scaffold1: 1574686-1574745 [+]
Precursor
(pre-Mir +30nt flank)
UUUUAGCUGAUUCACCUAGUUUAGUGGUACAAUACCUCAGUCUUUUCGGAUGUUCUAUAAAUUCACCUGGAAAUACUGAGGUUGCGUUUCACUGAACACAGACUUCACAUAUUUGAU
Get precursor sequence
Structure
        10          20        30        40        50        
UUUUAGCUGAUUCACCUA--|        U  AAU        C       A  UUCUA 
                    GUUUAGUGG AC   ACCUCAGU UUUUCGG UG     \
                    CAAGUCACU UG   UGGAGUCA AAAGGUC AC     U
UAGUUUAUACACUUCAGACA^        U  CGU        U       C  UUAAA 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Cl Cl Cl Cl Cl To
Mature sequence

Cli-Mir-875_5p

mirBase accessionMIMAT0038668
Sequence
0- AAUACCUCAGUCUUUUCGGAUG -22
Get sequence
Star sequence

Cli-Mir-875_3p*

mirBase accessionMIMAT0038669
Sequence
35- CCUGGAAAUACUGAGGUUGCGU -57
Get sequence