MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-875

Family name MIR-875 (all species)
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues Aca-Mir-875  Ami-Mir-875  Bta-Mir-875  Cfa-Mir-875  Cja-Mir-875  Cli-Mir-875  Cpi-Mir-875  Ebu-Mir-875  Eca-Mir-875  Ete-Mir-875  Gja-Mir-875  Hsa-Mir-875  Mdo-Mir-875  Mml-Mir-875  Mmr-Mir-875  Mmu-Mir-875  Mun-Mir-875  Oan-Mir-875  Ocu-Mir-875  Pab-Mir-875  Pbv-Mir-875  Pma-Mir-875  Rno-Mir-875  Sha-Mir-875  Spt-Mir-875 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010035.1: 46387067-46387123 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-875)		 Mir-599 GL010035.1: 46386921-46386979 [-] UCSC Ensembl
Mir-875 GL010035.1: 46387067-46387123 [-] UCSC Ensembl
Seed AUACCUC
Precursor
(pre-Mir +30nt flank)		 
UUUUUGUAAAAUUCAAAAGUUUGGUGGUACUAUACCUCAGUUUUAUCAGGUGUUCUUUAAAAUCACCUGGAAAUACUGAGGUUGUGUCUCACUGAACAUGAGCUUCGUGACUUCUGU
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Structure
        10          20        30        40        50        
UUUUUGUAAAAUUCAAAA--|  UG   GU  UAU        U  A       UUCUU 
                    GUU  GUG  AC   ACCUCAGU UU UCAGGUG     \
                    CAA  CAC  UG   UGGAGUCA AA GGUCCAC     U
UGUCUUCAGUGCUUCGAGUA^  GU   UC  UGU        U  A       UAAAA 
     110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Wh
Mature sequence

Laf-Mir-875_5p (predicted)
mirBase accessionNone
Sequence 
0- UAUACCUCAGUUUUAUCAGGUG -22
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Star sequence

Laf-Mir-875_3p* (predicted)
mirBase accessionNone
Sequence 
35- CCUGGAAAUACUGAGGUUGUGU -57
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