MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-875

Family name MIR-875 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-875
Paralogues
Orthologues Aca-Mir-875  Ami-Mir-875  Bta-Mir-875  Cfa-Mir-875  Cja-Mir-875  Cli-Mir-875  Cpi-Mir-875  Ebu-Mir-875  Eca-Mir-875  Ete-Mir-875  Gja-Mir-875  Hsa-Mir-875  Laf-Mir-875  Mdo-Mir-875  Mml-Mir-875  Mmr-Mir-875  Mmu-Mir-875  Mun-Mir-875  Oan-Mir-875  Ocu-Mir-875  Pab-Mir-875  Pbv-Mir-875  Rno-Mir-875  Sha-Mir-875  Spt-Mir-875 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046080.1: 10566495-10566553 [+] UCSC Ensembl
Seed AUACCUC
Precursor
(pre-Mir +30nt flank)		 
GGCAACAACAGCCACCGGUCUGCCUGAGACAAUACCUCAGAAUUGUCAGGGUGCUCAGCAAUCCGCACCUGACAGUGCUGGGGUUUAGUCUCAGCAGACGACGCUCUGCUCCCUCGCUA
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Structure
        10           20        30        40        50         
GGCAACAACAGCCACCG---|     C      AAU       A         -  GCUCA 
                    GUCUGC UGAGAC   ACCUCAG AUUGUCAGG GU     G
                    CAGACG ACUCUG   UGGGGUC UGACAGUCC CG     C
AUCGCUCCCUCGUCUCGCAG^     -      AUU       G         A  CCUAA 
       110       100         90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-875_5p
mirBase accessionMIMAT0019559
Sequence 
0- AAUACCUCAGAAUUGUCAGGGU -22
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Star sequence

Pma-Mir-875_3p* (predicted)
mirBase accessionNone
Sequence 
37- CCUGACAGUGCUGGGGUUUAGU -59
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