MirGeneDB ID | Sha-Mir-875 |
Family name |
MIR-875 (all species) |
Seed |
AUACCUC |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aca-Mir-875
Ami-Mir-875
Bta-Mir-875
Cfa-Mir-875
Cli-Mir-875
Cpi-Mir-875
Ebu-Mir-875
Ete-Mir-875
Gja-Mir-875
Hsa-Mir-875
Mdo-Mir-875
Mml-Mir-875
Mmu-Mir-875
Mun-Mir-875
Oan-Mir-875
Ocu-Mir-875
Pbv-Mir-875
Pma-Mir-875
Rno-Mir-875
Spt-Mir-875
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (DEVIL_add) |
GL841372.1: 967114-967170 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UACUGGAAGAUGCAAACAGUUCUGUGGUACAAUACCUCAGUCUUAUCAGGUGUUCUUUAAAAUCACCUGGAAAUGCUGAGGUUGCGUUUCACUGAACUCAGAAGCCUCAAGAUGACA
Get precursor sequence
|
Structure | 10 20 30 40 50
UACUGGAAGAUGCAAAC--| U U AAU C A UUCUU
AGUUC GUGG AC ACCUCAGU UU UCAGGUG \
UCAAG CACU UG UGGAGUCG AA GGUCCAC U
ACAGUAGAACUCCGAAGAC^ U U CGU U A UAAAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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Mature sequence |
Sha-Mir-875_5p |
mirBase accession | None |
Sequence |
0- AAUACCUCAGUCUUAUCAGGUGU -23
Get sequence
|
Star sequence |
Sha-Mir-875_3p* |
mirBase accession | None |
Sequence |
35- CCUGGAAAUGCUGAGGUUGCGU -57
Get sequence
|