MirGeneDB 2.1

MirGeneDB ID

Spt-Mir-875

Family name MIR-875 (all species)
Seed AUACCUC
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-875  Ami-Mir-875  Bta-Mir-875  Cfa-Mir-875  Cli-Mir-875  Cpi-Mir-875  Ebu-Mir-875  Ete-Mir-875  Gja-Mir-875  Hsa-Mir-875  Mdo-Mir-875  Mml-Mir-875  Mmu-Mir-875  Mun-Mir-875  Oan-Mir-875  Ocu-Mir-875  Pbv-Mir-875  Pma-Mir-875  Rno-Mir-875  Sha-Mir-875 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01007203.1: 2272480-2272536 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGUUUUACGUUGUGUAGUUUUGUGGUACAAUACCUCAGUCUUAUCAGGUGUUCUAUACAUUUACCUGGAAAUACUGAGGUUGAGUUUCACUAAACACAAGCUUCAUGUUCUCUGU
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Structure
        10          20        30        40        50        
UGUGUUUUACGUUGUGUA--|   U    U  AAU        C  A       UUCUA 
                    GUUU GUGG AC   ACCUCAGU UU UCAGGUG     \
                    CAAA CACU UG   UGGAGUCA AA GGUCCAU     U
UGUCUCUUGUACUUCGAACA^   U    U  AGU        U  A       UUACA 
     110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Spt-Mir-875_5p (predicted)

mirBase accessionNone
Sequence
0- AAUACCUCAGUCUUAUCAGGUG -22
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Star sequence

Spt-Mir-875_3p* (predicted)

mirBase accessionNone
Sequence
35- CCUGGAAAUACUGAGGUUGAGU -57
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