MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-875

Family name MIR-875 (all species)
Seed AUACCUC
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-875
Paralogues
Orthologues Aca-Mir-875  Ami-Mir-875  Bta-Mir-875  Cfa-Mir-875  Cli-Mir-875  Cpi-Mir-875  Ebu-Mir-875  Ete-Mir-875  Gja-Mir-875  Hsa-Mir-875  Mml-Mir-875  Mmu-Mir-875  Mun-Mir-875  Oan-Mir-875  Ocu-Mir-875  Pbv-Mir-875  Pma-Mir-875  Rno-Mir-875  Sha-Mir-875  Spt-Mir-875 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)
3: 364601425-364601481 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-875)
Mir-599 3: 364601270-364601328 [-] UCSC Ensembl
Mir-875 3: 364601425-364601481 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUUGGAAGAUGUACACAGUUCUGUGGUACAAUACCUCAGUCUUAUCAGGUGUUAAUUAAAAUCACCUGGAAAUGCUGAGGUUGCGUUUCACUGAACUCAGGAGCCUCAAGAGGACA
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Structure
        10          20        30        40        50        
UAUUGGAAGAUGUACAC--|    U    U  AAU        C  A       UUAAU 
                   AGUUC GUGG AC   ACCUCAGU UU UCAGGUG     \
                   UCAAG CACU UG   UGGAGUCG AA GGUCCAC     U
ACAGGAGAACUCCGAGGAC^    U    U  CGU        U  A       UAAAA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-875_5p

mirBase accessionMIMAT0012766
Sequence
0- AAUACCUCAGUCUUAUCAGGUG -22
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Proposed targets TargetScanVert: mdo-miR-875-5p
Star sequence

Mdo-Mir-875_3p*

mirBase accessionMIMAT0026949
Sequence
35- CCUGGAAAUGCUGAGGUUGCGU -57
Get sequence
Proposed targets TargetScanVert: mdo-miR-875-3p