MirGeneDB 3.0

MirGeneDB ID

Mun-Mir-875

Family name MIR-875 (all species)
Species Microcaecilia (Microcaecilia unicolor)
MiRBase ID
Paralogues
Orthologues Aca-Mir-875  Ami-Mir-875  Bta-Mir-875  Cfa-Mir-875  Cja-Mir-875  Cli-Mir-875  Cpi-Mir-875  Ebu-Mir-875  Eca-Mir-875  Ete-Mir-875  Gja-Mir-875  Hsa-Mir-875  Laf-Mir-875  Mdo-Mir-875  Mml-Mir-875  Mmr-Mir-875  Mmu-Mir-875  Oan-Mir-875  Ocu-Mir-875  Pab-Mir-875  Pbv-Mir-875  Pma-Mir-875  Rno-Mir-875  Sha-Mir-875  Spt-Mir-875 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_901765095.2_aMicUni1.2)
LR594632.1: 549018692-549018748 [-]
Clustered miRNAs
(< 50kb from Mir-875)
Mir-599 LR594632.1: 549018538-549018597 [-]
Mir-875 LR594632.1: 549018692-549018748 [-]
Seed AUACCUC
Precursor
(pre-Mir +30nt flank)
CAUUUGAAAUUCGAGAAAGUUCUGUGGAGCAAUACCUCAGUCUUAUCAGGUGUCCUACAAAAUUACCUGGAAAUACUGAGGUUGAGUUUCACUGAGCAUUAAGCUUCAUGUCUGGUG
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Structure
        10          20        30        40        50        
CAUUUGAAAUUCGAGAAA--|   U       AAU        C  A       UCCUA 
                    GUUC GUGGAGC   ACCUCAGU UU UCAGGUG     \
                    CGAG CACUUUG   UGGAGUCA AA GGUCCAU     C
GUGGUCUGUACUUCGAAUUA^   U       AGU        U  A       UAAAA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Mun-Mir-875_5p

mirBase accessionNone
Sequence
0- AAUACCUCAGUCUUAUCAGGUG -22
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Star sequence

Mun-Mir-875_3p* (predicted)

mirBase accessionNone
Sequence
35- CCUGGAAAUACUGAGGUUGAGU -57
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