MirGeneDB ID | Ebu-Mir-875 |
Family name |
MIR-875 (all species) |
Seed |
AUACCUC |
Species |
Inshore hagfish (Eptatretus burgeri) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aca-Mir-875
Ami-Mir-875
Bta-Mir-875
Cfa-Mir-875
Cli-Mir-875
Cpi-Mir-875
Ete-Mir-875
Gja-Mir-875
Hsa-Mir-875
Mdo-Mir-875
Mml-Mir-875
Mmu-Mir-875
Mun-Mir-875
Oan-Mir-875
Ocu-Mir-875
Pbv-Mir-875
Pma-Mir-875
Rno-Mir-875
Sha-Mir-875
Spt-Mir-875
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (Eburgeri_3) |
FYBX02009683.1: 3652937-3652996 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGGGAGAGCGCAUUCCUAACUGACCGAGGCAAUACCUCAGAAUUGUCAGGACGUCCGUUACUCUAACGCCUGACAGCUCUGAGGUGUCGUCCCGGCGGUCACAUCCCAGCACCACGGCCC
Get precursor sequence
|
Structure | 10 20 30 40 50
UGGGAGAGCGCAUUCCUA---| A A A A A GUCCGUU
ACUG CCG GGC AUACCUCAGA UUGUCAGG C \
UGGC GGC CUG UGUGGAGUCU GACAGUCC G A
CCCGGCACCACGACCCUACAC^ - C C C - CAAUCUC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ebu-Mir-875_5p |
mirBase accession | None |
Sequence |
0- AAUACCUCAGAAUUGUCAGGAC -22
Get sequence
|
Star sequence |
Ebu-Mir-875_3p* |
mirBase accession | None |
Sequence |
38- CCUGACAGCUCUGAGGUGUCGU -60
Get sequence
|