MirGeneDB ID | Spt-Mir-599 |
---|---|
Family name | MIR-599 (all species) |
Seed | UUGAUAA |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | |
Orthologues | Ami-Mir-599 Bta-Mir-599 Cfa-Mir-599 Cli-Mir-599 Cpi-Mir-599 Ete-Mir-599 Hsa-Mir-599 Lch-Mir-599 Mdo-Mir-599 Mml-Mir-599 Mmu-Mir-599 Mun-Mir-599 Oan-Mir-599 Ocu-Mir-599 Pbv-Mir-599 Sha-Mir-599 Tgu-Mir-599 |
Node of Origin (locus) | Sarcopterygii |
Node of Origin (family) | Sarcopterygii |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01007203.1: 2272331-2272388 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CAAUCUGAAAGACAUACUGUCCAUAGUGUGUUUGAUAAGCUGACAUGGGACAGGAGUUAUUUUCACUGUUGUGUCAGUUUAUCAAACCCAUACCUGGGCAUCAGUCAAAUCCUAUACAGet precursor sequence |
Structure | 10 20 30 40 50 CAAUCUGAAAGACAUAC- UA-| U GG GAGUU UGUCCA GUG GUUUGAUAAGCUGACAU GACAG A ACGGGU UAC CAAACUAUUUGACUGUG UUGUC U ACAUAUCCUAAACUGACU CCA^ C -- ACUUU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Mature sequence | Spt-Mir-599_5p (predicted) |
mirBase accession | None |
Sequence |
0- UUUGAUAAGCUGACAUGGGACAG -23
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|
Star sequence | Spt-Mir-599_3p* (predicted) |
mirBase accession | None |
Sequence |
37- GUUGUGUCAGUUUAUCAAACC -58
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|