| MirGeneDB ID | Spt-Mir-599 |
|---|---|
| Family name | MIR-599 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Ami-Mir-599 Bta-Mir-599 Cfa-Mir-599 Cja-Mir-599 Cli-Mir-599 Cpi-Mir-599 Eca-Mir-599 Ete-Mir-599 Hsa-Mir-599 Laf-Mir-599 Lch-Mir-599 Mdo-Mir-599 Mml-Mir-599 Mmr-Mir-599 Mmu-Mir-599 Mun-Mir-599 Neu-Mir-599 Oan-Mir-599 Ocu-Mir-599 Pab-Mir-599 Pbv-Mir-599 Sha-Mir-599 Tgu-Mir-599 |
| Node of Origin (locus) | Sarcopterygii |
| Node of Origin (family) | Sarcopterygii |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01007203.1: 2272330-2272388 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-599) |
Mir-599
QEPC01007203.1: 2272330-2272388 [-]
UCSC
Ensembl
Mir-875 QEPC01007203.1: 2272480-2272536 [-] UCSC Ensembl |
| Seed | UUGAUAA |
| Precursor (pre-Mir +30nt flank) |
CAAUCUGAAAGACAUACUGUCCAUAGUGUGUUUGAUAAGCUGACAUGGGACAGGAGUUAUUUUCACUGUUGUGUCAGUUUAUCAAACCCAUACCUGGGCAUCAGUCAAAUCCUAUACAAGet precursor sequence |
| Structure | 10 20 30 40 50 CAAUCUGAAAGACAUAC-- UA-| U GG GAGUU UGUCCA GUG GUUUGAUAAGCUGACAU GACAG A ACGGGU UAC CAAACUAUUUGACUGUG UUGUC U AACAUAUCCUAAACUGACU CCA^ C -- ACUUU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Spt-Mir-599_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUUGAUAAGCUGACAUGGGACAG -23
Get sequence
|
| Star sequence | Spt-Mir-599_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- GUUGUGUCAGUUUAUCAAACCC -59
Get sequence
|
