Mir-599

MirGeneDB ID

Ami-Mir-599

Family name

MIR-599 (all species)

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-599

Paralogues

Orthologues

Bta-Mir-599 Cfa-Mir-599 Cja-Mir-599 Cli-Mir-599 Cpi-Mir-599 Eca-Mir-599 Ete-Mir-599 Hsa-Mir-599 Laf-Mir-599 Lch-Mir-599 Mdo-Mir-599 Mml-Mir-599 Mmr-Mir-599 Mmu-Mir-599 Mun-Mir-599 Neu-Mir-599 Oan-Mir-599 Ocu-Mir-599 Pab-Mir-599 Pbv-Mir-599 Sha-Mir-599 Spt-Mir-599 Tgu-Mir-599

Node of Origin (locus)

Sarcopterygii

Node of Origin (family)

Sarcopterygii

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017712118.1: 18806757-18806815 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-599)

Mir-875 NW_017712118.1: 18806611-18806667 [+] UCSC
Mir-599 NW_017712118.1: 18806757-18806815 [+] UCSC

Seed

UUGAUAA

Precursor
(pre-Mir +30nt flank)

CAAUAUGAAAGACAUAUUGUCCAUAGUGUGUUUGAUAAGCUGACAUGGGACAGGAGUUCUUUUCACUGUUGUGUCAGUUUAUCAAACCCAUACCUGGACAUCAGUCAAAUACUAUAAAA

Get precursor sequence

Structure

        10          20         30        40        50         
CAAUAUGAAAGACAUAU--      UA-|  U                 GG    GGAGUU 
                   UGUCCA   GUG GUUUGAUAAGCUGACAU  GACA      C
                   ACAGGU   UAC CAAACUAUUUGACUGUG  UUGU      U
AAAAUAUCAUAAACUGACU      CCA^  C                 --    CACUUU 
       110       100        90        80          70        60