MirGeneDB 2.1
MirGeneDB ID

Cli-Mir-375

Family name MIR-375 (all species)
Seed UUGUUCG
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-375
Paralogues
Orthologues Aae-Mir-375  Aca-Mir-375  Ami-Mir-375  Asu-Mir-375  Bfl-Mir-375  Bge-Mir-375  Bla-Mir-375  Bpl-Mir-375  Bta-Mir-375  Cbr-Mir-375  Cel-Mir-375  Cfa-Mir-375  Cgi-Mir-375-P3  Cgi-Mir-375-P4  Cin-Mir-375  Cpi-Mir-375  Cpo-Mir-375  Csc-Mir-375-P11  Csc-Mir-375-P12  Cte-Mir-375  Dan-Mir-375  Dma-Mir-375  Dme-Mir-375  Dmo-Mir-375  Dno-Mir-375  Dpu-Mir-375  Dre-Mir-375-P1  Dre-Mir-375-P2  Dsi-Mir-375  Dya-Mir-375  Ebu-Mir-375  Efe-Mir-375  Esc-Mir-375  Ete-Mir-375  Gga-Mir-375  Gja-Mir-375  Gmo-Mir-375-P2  Hme-Mir-375  Hsa-Mir-375  Isc-Mir-375  Lan-Mir-375  Lch-Mir-375  Lgi-Mir-375  Loc-Mir-375  Lpo-Mir-375-P8  Lpo-Mir-375-P9  Lpo-Mir-375-P10  Mal-Mir-375-P2  Mdo-Mir-375  Mml-Mir-375  Mmu-Mir-375  Mun-Mir-375-P7a  Mun-Mir-375-P7b  Npo-Mir-375  Oan-Mir-375  Obi-Mir-375  Ocu-Mir-375  Ovu-Mir-375  Pbv-Mir-375  Pfl-Mir-375  Pma-Mir-375-P5  Pma-Mir-375-P6  Pmi-Mir-375  Rno-Mir-375  Sha-Mir-375  Sko-Mir-375  Spt-Mir-375  Spu-Mir-375  Sto-Mir-375  Tca-Mir-375  Tgu-Mir-375  Tni-Mir-375-P2  Xla-Mir-375-P13  Xla-Mir-375-P14  Xtr-Mir-375 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(colLiv2)		 scaffold32: 1406275-1406332 [-]
Clustered miRNAs
(< 50kb from Mir-375)		 Mir-1788 scaffold32: 1391518-1391576 [-]
Mir-375 scaffold32: 1406275-1406332 [-]
Precursor
(pre-Mir +30nt flank)
CCGAGCCUGGAGCAACUCUGCACUUGCCUGGCGUCGAGCCCCACGUGCAAGACCUGACCUGAACGUUUUGUUCGUUCGGCUCGCGUUAGGCAGGUCCAGCCCAUCUGCAAGCGUGCGG
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Structure
        10          20        30        40        50         
CCGAGCCUGGAGCAACU--|  C            U      CC   U       CUGAC 
                   CUG ACUUGCCUGGCG CGAGCC  ACG GCAAGAC     \
                   GAC UGGACGGAUUGC GCUCGG  UGC UGUUUUG     C
GGCGUGCGAACGUCUACCC^  C            -      CU   U       CAAGU 
      110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Cl Cl Cl Cl Cl To
Star sequence

Cli-Mir-375_5p*
mirBase accessionMIMAT0038628
Sequence 
0- GCGUCGAGCCCCACGUGCAAGAC -23
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Mature sequence

Cli-Mir-375_3p
mirBase accessionMIMAT0038629
Sequence 
36- UUUGUUCGUUCGGCUCGCGUUA -58
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