MirGeneDB

MirGeneDB ID

Sto-Mir-375

Family name MIR-375 (all species)
Seed UUGUUCG
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues
Orthologues Aae-Mir-375  Aca-Mir-375  Ami-Mir-375  Asu-Mir-375  Bfl-Mir-375  Bge-Mir-375  Bta-Mir-375  Cbr-Mir-375  Cel-Mir-375  Cfa-Mir-375  Cgi-Mir-375-P3  Cgi-Mir-375-P4  Cin-Mir-375  Cli-Mir-375  Cpi-Mir-375  Cpo-Mir-375  Cte-Mir-375  Dan-Mir-375  Dme-Mir-375  Dmo-Mir-375  Dno-Mir-375  Dpu-Mir-375  Dre-Mir-375-P1  Dre-Mir-375-P2  Efe-Mir-375  Ete-Mir-375  Gga-Mir-375  Hme-Mir-375  Hsa-Mir-375  Isc-Mir-375  Lan-Mir-375  Lgi-Mir-375  Mdo-Mir-375  Mml-Mir-375  Mmu-Mir-375  Oan-Mir-375  Ocu-Mir-375  Pfl-Mir-375  Pmi-Mir-375  Rno-Mir-375  Sha-Mir-375  Sko-Mir-375  Spu-Mir-375  Tca-Mir-375  Tgu-Mir-375  Xtr-Mir-375 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(miRNA_loci_genome)
BFAA01003985.1: 202342-202399 [+]
Precursor
(pre-Mir +30nt flank)
CCAUCCCGGGCUUAACUCCGCGCCUGCCUGACGCCGAGCCAUACAAACAAUACCUAUUGUAAAAGUUUUGUUCGUUCGGCUCGCGUUACGCAGGGGUGGUAUNNNNNNNNNNNNNNNN
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Structure
        10          20        30        40        50         
CCAUCCCGGGCUUAACU--|   G     C      C     AU  A     U  CUAUU 
                   CCGC CCUGC UGACGC GAGCC  AC AACAA AC     \
                   GGUG GGACG AUUGCG CUCGG  UG UUGUU UG     G
NNNNNNNNNNNNNNNNUAU^   G     C      -     CU  C     U  AAAAU 
      110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Sto-Mir-375_5p* (predicted)

MirBase accessionNone
Sequence
0- ACGCCGAGCCAUACAAACAAUAC -23
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Mature sequence

Sto-Mir-375_3p

MirBase accessionNone
Sequence
36- UUUGUUCGUUCGGCUCGCGUUA -58
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