Mir-375-P14

MirGeneDB ID

Xla-Mir-375-P14

Family name

MIR-375 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-375-P13

Orthologues

Aae-Mir-375 Aca-Mir-375 Aga-Mir-375 Agr-Mir-375 Ami-Mir-375 Asu-Mir-375 Bfl-Mir-375 Bge-Mir-375 Bko-Mir-375 Bla-Mir-375 Bpl-Mir-375 Bta-Mir-375 Cbr-Mir-375 Cel-Mir-375 Cfa-Mir-375 Cin-Mir-375 Cja-Mir-375 Cli-Mir-375 Cpi-Mir-375 Cpo-Mir-375 Dan-Mir-375 Dgr-Mir-375 Dlo-Mir-375 Dma-Mir-375 Dme-Mir-375 Dmo-Mir-375 Dno-Mir-375 Dpu-Mir-375 Dsi-Mir-375 Dya-Mir-375 Eba-Mir-375 Ebu-Mir-375 Eca-Mir-375 Efe-Mir-375 Esc-Mir-375 Ete-Mir-375 Gga-Mir-375 Gja-Mir-375 Gpa-Mir-375 Hme-Mir-375 Hru-Mir-375 Hsa-Mir-375 Isc-Mir-375 Laf-Mir-375 Lan-Mir-375 Lch-Mir-375 Lgi-Mir-375 Lhy-Mir-375 Llo-Mir-375 Loc-Mir-375 Mdo-Mir-375 Mml-Mir-375 Mmr-Mir-375 Mmu-Mir-375 Mom-Mir-375 Neu-Mir-375 Npo-Mir-375 Oan-Mir-375 Obi-Mir-375 Ocu-Mir-375 Ofu-Mir-375 Ovu-Mir-375 Pab-Mir-375 Pau-Mir-375 Pbv-Mir-375 Pca-Mir-375 Pcr-Mir-375 Pdu-Mir-375 Pfl-Mir-375 Pmi-Mir-375 Pve-Mir-375 Rno-Mir-375 Sha-Mir-375 Sko-Mir-375 Sne-Mir-375 Snu-Mir-375 Spt-Mir-375 Spu-Mir-375 Sto-Mir-375 Tca-Mir-375 Tgu-Mir-375 Tur-Mir-375 War-Mir-375 Xtr-Mir-375

Node of Origin (locus)

X. laevis

Node of Origin (family)

Nephrozoa

Genome context
(GCF_001663975.1_XLA_v2)

NC_030741.1: 47656277-47656334 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-375-P14)

Mir-375-P14 NC_030741.1: 47656277-47656334 [+] UCSC Ensembl
Mir-1788-P2 NC_030741.1: 47696710-47696768 [+] UCSC Ensembl

Seed

UUGUUCG

Precursor
(pre-Mir +30nt flank)

GGUCAAUCACACCAGCUCUGUACUUGCCUGACGUCGAGCCAGACGUGCAAUGCUUUGUAUUAACGUUUUGUUCGUUCGGCUCGCGUUAAGCAGGCACGGCUUGUCUGCUCACUCCUGA

Get precursor sequence

Structure

        10          20        30        40        50         
GGUCAAUCACACCAGCU--|   A     C     U      AG   U    U  UUUGU 
                   CUGU CUUGC UGACG CGAGCC  ACG GCAA GC     \
                   GGCA GGACG AUUGC GCUCGG  UGC UGUU UG     A
AGUCCUCACUCGUCUGUUC^   C     A     -      CU   U    U  CAAUU 
      110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Star sequence

Xla-Mir-375-P14_5p*

mirBase accession

None

Sequence

0- ACGUCGAGCCAGACGUGCAAUGC -23

Get sequence

Mature sequence

Xla-Mir-375-P14_3p

mirBase accession

None

Sequence

36- UUUGUUCGUUCGGCUCGCGUUA -58

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