MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-375

Family name MIR-375 (all species)
Seed UUGUUCG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-375
Paralogues
Orthologues Aae-Mir-375  Aca-Mir-375  Ami-Mir-375  Asu-Mir-375  Bfl-Mir-375  Bge-Mir-375  Bla-Mir-375  Bpl-Mir-375  Bta-Mir-375  Cbr-Mir-375  Cel-Mir-375  Cfa-Mir-375  Cgi-Mir-375-P3  Cgi-Mir-375-P4  Cin-Mir-375  Cli-Mir-375  Cpi-Mir-375  Cpo-Mir-375  Csc-Mir-375-P11  Csc-Mir-375-P12  Cte-Mir-375  Dan-Mir-375  Dma-Mir-375  Dme-Mir-375  Dmo-Mir-375  Dno-Mir-375  Dpu-Mir-375  Dre-Mir-375-P1  Dre-Mir-375-P2  Dsi-Mir-375  Dya-Mir-375  Ebu-Mir-375  Efe-Mir-375  Esc-Mir-375  Ete-Mir-375  Gga-Mir-375  Gja-Mir-375  Gmo-Mir-375-P2  Hme-Mir-375  Hsa-Mir-375  Isc-Mir-375  Lan-Mir-375  Lch-Mir-375  Lgi-Mir-375  Loc-Mir-375  Lpo-Mir-375-P8  Lpo-Mir-375-P9  Lpo-Mir-375-P10  Mal-Mir-375-P2  Mdo-Mir-375  Mml-Mir-375  Mmu-Mir-375  Mun-Mir-375-P7a  Mun-Mir-375-P7b  Npo-Mir-375  Oan-Mir-375  Obi-Mir-375  Ocu-Mir-375  Ovu-Mir-375  Pbv-Mir-375  Pfl-Mir-375  Pma-Mir-375-P5  Pma-Mir-375-P6  Pmi-Mir-375  Sha-Mir-375  Sko-Mir-375  Spt-Mir-375  Spu-Mir-375  Sto-Mir-375  Tca-Mir-375  Tgu-Mir-375  Tni-Mir-375-P2  Xla-Mir-375-P13  Xla-Mir-375-P14  Xtr-Mir-375 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(rn6)		 chr9: 82161725-82161781 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCAGGCCCCGGGUCCUCCGCUCCGGCCCCGCGACGAGCCCCUCGCACAAACCGGACCUGAGCGUUUUGUUCGUUCGGCUCGCGUGAGGCAGGGGCGGCUUCUCAGCAUAAGCCCCG
Get precursor sequence
Structure
        10          20        30        40        50        
GCCAGGCCCCGGGUCCU--|      G   C    A      CCU  C     C GGAC 
                   CCGCUCC GCC CGCG CGAGCC   CG ACAAA C    C
                   GGCGGGG CGG GUGC GCUCGG   GC UGUUU G    U
GCCCCGAAUACGACUCUUC^      A   A    -      CUU  U     U CGAG 
     110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-375_5p*
mirBase accessionMIMAT0017301
Sequence 
0- GCGACGAGCCCCUCGCACAAACC -23
Get sequence
Proposed targets TargetScanVert: rno-miR-375-5p
miRDB: MIMAT0017301
Mature sequence

Rno-Mir-375_3p
mirBase accessionMIMAT0005307
Sequence 
35- UUUGUUCGUUCGGCUCGCGUGA -57
Get sequence
Proposed targets microrna.org: MIMAT0005307
TargetScanVert: rno-miR-375-3p
miRDB: MIMAT0005307