Mir-375-P4

MirGeneDB ID

Mgi-Mir-375-P4

Family name

MIR-375 (all species)

Species

Pacific oyster (Magallana gigas)

MiRBase ID

Paralogues

Mgi-Mir-375-P3

Orthologues

Aae-Mir-375 Aca-Mir-375 Aga-Mir-375 Agr-Mir-375 Ami-Mir-375 Asu-Mir-375 Bfl-Mir-375 Bge-Mir-375 Bko-Mir-375 Bla-Mir-375 Bpl-Mir-375 Bta-Mir-375 Cbr-Mir-375 Cel-Mir-375 Cfa-Mir-375 Cin-Mir-375 Cja-Mir-375 Cli-Mir-375 Cpi-Mir-375 Cpo-Mir-375 Dan-Mir-375 Dgr-Mir-375 Dlo-Mir-375 Dma-Mir-375 Dme-Mir-375 Dmo-Mir-375 Dno-Mir-375 Dpu-Mir-375 Dsi-Mir-375 Dya-Mir-375 Eba-Mir-375 Ebu-Mir-375 Eca-Mir-375 Efe-Mir-375 Esc-Mir-375 Ete-Mir-375 Gga-Mir-375 Gja-Mir-375 Gpa-Mir-375 Hme-Mir-375 Hru-Mir-375 Hsa-Mir-375 Isc-Mir-375 Laf-Mir-375 Lan-Mir-375 Lch-Mir-375 Lgi-Mir-375 Lhy-Mir-375 Llo-Mir-375 Loc-Mir-375 Mdo-Mir-375 Mml-Mir-375 Mmr-Mir-375 Mmu-Mir-375 Mom-Mir-375 Neu-Mir-375 Npo-Mir-375 Oan-Mir-375 Obi-Mir-375 Ocu-Mir-375 Ofu-Mir-375 Ovu-Mir-375 Pab-Mir-375 Pau-Mir-375 Pbv-Mir-375 Pca-Mir-375 Pcr-Mir-375 Pdu-Mir-375 Pfl-Mir-375 Pmi-Mir-375 Pve-Mir-375 Rno-Mir-375 Sha-Mir-375 Sko-Mir-375 Sne-Mir-375 Snu-Mir-375 Spt-Mir-375 Spu-Mir-375 Sto-Mir-375 Tca-Mir-375 Tgu-Mir-375 Tur-Mir-375 War-Mir-375 Xtr-Mir-375

Node of Origin (locus)

C. gigas

Node of Origin (family)

Nephrozoa

Genome context
(CGI_GCA_000297895.1)

scaffold527: 290181-290238 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-375-P4)

Mir-375-P3 scaffold527: 289953-290015 [+] Ensembl
Mir-375-P4 scaffold527: 290181-290238 [+] Ensembl

Seed

UUGUUCA

Precursor
(pre-Mir +30nt flank)

UUCAAGAAGAACAACUCUUGCAGACAGGUCACGUGCGCUGUAUGUAACAACACGAGACACAAACGUUUUGUUCAGUCAGCUCGCGUUAUUGAGUCUACUCAUACAUCACUGAAUCUAU

Get precursor sequence

Structure

        10        20          30        40        50         
UUCAAGAAGAACAACUCUUGC-    A-|  C     C    UA  U     C  GAGAC 
                      AGAC  GGU ACGUG GCUG  UG AACAA AC     \
                      UCUG  UUA UGCGC CGAC  AC UUGUU UG     A
UAUCUAAGUCACUACAUACUCA    AG^  U     U    UG  -     U  CAAAC 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

A-	D-	D-	F-	L-	Ea	Eg	Fe	Gi	Ha	He	Ju	La	Ma	Ma	Ma	Pe	Re	Sp	Um

Star sequence

Mgi-Mir-375-P4_5p*

mirBase accession

None

Sequence

0- ACGUGCGCUGUAUGUAACAACAC -23

Get sequence

Mature sequence

Mgi-Mir-375-P4_3p

mirBase accession

None

Sequence

36- UUUGUUCAGUCAGCUCGCGUUA -58

Get sequence