Mir-375

MirGeneDB ID

Dpu-Mir-375

Family name

MIR-375 (all species)

Species

Common water flea (Daphnia pulex)

MiRBase ID

dpu-mir-375

Paralogues

Orthologues

Aae-Mir-375 Aca-Mir-375 Aga-Mir-375 Agr-Mir-375 Ami-Mir-375 Asu-Mir-375 Ava-Mir-375-P20 Ava-Mir-375-P21 Bfl-Mir-375 Bge-Mir-375 Bko-Mir-375 Bla-Mir-375 Bpl-Mir-375 Bta-Mir-375 Cbr-Mir-375 Cel-Mir-375 Cfa-Mir-375 Cin-Mir-375 Cja-Mir-375 Cli-Mir-375 Cpi-Mir-375 Cpo-Mir-375 Csc-Mir-375-P11 Csc-Mir-375-P12 Cte-Mir-375-P15 Cte-Mir-375-P16 Dan-Mir-375 Dgr-Mir-375 Dlo-Mir-375 Dma-Mir-375 Dme-Mir-375 Dmo-Mir-375 Dno-Mir-375 Dre-Mir-375-P1 Dre-Mir-375-P2 Dsi-Mir-375 Dya-Mir-375 Eba-Mir-375 Ebu-Mir-375 Eca-Mir-375 Efe-Mir-375 Esc-Mir-375 Ete-Mir-375 Gga-Mir-375 Gja-Mir-375 Gmo-Mir-375-P2 Gpa-Mir-375 Hme-Mir-375 Hru-Mir-375 Hsa-Mir-375 Isc-Mir-375 Laf-Mir-375 Lan-Mir-375 Lch-Mir-375 Lgi-Mir-375 Lhy-Mir-375 Llo-Mir-375 Loc-Mir-375 Lpo-Mir-375-P8 Lpo-Mir-375-P9 Lpo-Mir-375-P10 Mal-Mir-375-P2 Mdo-Mir-375 Mgi-Mir-375-P3 Mgi-Mir-375-P4 Mml-Mir-375 Mmr-Mir-375 Mmu-Mir-375 Mom-Mir-375 Mun-Mir-375-P7a Mun-Mir-375-P7b Neu-Mir-375 Npo-Mir-375 Oan-Mir-375 Obi-Mir-375 Ocu-Mir-375 Ofu-Mir-375 Ovu-Mir-375 Pab-Mir-375 Pau-Mir-375 Pbv-Mir-375 Pca-Mir-375 Pcr-Mir-375 Pdu-Mir-375 Pfl-Mir-375 Pma-Mir-375-P5 Pma-Mir-375-P6 Pmi-Mir-375 Pve-Mir-375 Rno-Mir-375 Rph-Mir-375-P17a Rph-Mir-375-P17b Rph-Mir-375-P17c Rph-Mir-375-P17d Rph-Mir-375-P18 Rph-Mir-375-P19a Rph-Mir-375-P19b Sha-Mir-375 Sko-Mir-375 Sne-Mir-375 Snu-Mir-375 Spt-Mir-375 Spu-Mir-375 Sto-Mir-375 Tca-Mir-375 Tgu-Mir-375 Tni-Mir-375-P2 Tur-Mir-375 War-Mir-375 Xla-Mir-375-P13 Xla-Mir-375-P14 Xtr-Mir-375

Node of Origin (locus)

Nephrozoa

Node of Origin (family)

Nephrozoa

Genome context
(Daphnia_pulex.V1.0)

DAPPUscaffold_28: 221232-221513 [+] Ensembl

Seed

UUGUUCG

Precursor
(pre-Mir +30nt flank)

UGGAAAAAAGUUUAAAAUAACUGUCUGUUGACUCGAGCUGAUCGUAUAAGCCUGGAGUUUUUAUCGCGCUUCAUGGUGCGAAAAGAUUUCUCGCAACUCUUUCUCCGGCGACGACAUUUUUAUUUUUCGUCUUUCUCUCUCCUGAUUUCUUUUCACCAAUUUUUCUACUGCUGGCGAUUGCAAUCCUGUCGGUUGAAGUUGAAUGGGAGAGAGAAAAGGAGCGAGAGAGACGGGAGUGUGUCGUGAAAAAAGUCGCCGGAGUUGAUGUUGCGGUCACAUUUGCAGUUCGGUUUGUUCGUUCGGCUUGAGUUAGUUUGACAGUCAAAUAGCGUCGGUUAUAGU

Get precursor sequence

Structure

        10         20         30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
UGGAAAAAAGUUUAAAAUA-      UG-|             U  U       UGGAGUUUUUAUCGCGCUUCAUGGUGCGAAAAGAUUUCUCGCAACUCUUUCUCCGGCGACGACAUUUUUAUUUUUCGUCUUUCUCUCUCCUGAUUUCUUUUCACCAAUUUUUCUACU 
                    ACUGUC   UUGACUCGAGCUGA CG AUAAGCC                                                                                                                     G
                    UGACAG   GAUUGAGUUCGGCU GC UGUUUGG                                                                                                                     C
UGAUAUUGGCUGCGAUAAAC      UUU^             U  U       CUUGACGUUUACACUGGCGUUGUAGUUGAGGCCGCUGAAAAAAGUGCUGUGUGAGGGCAGAGAGAGCGAGGAAAAGAGAGAGGGUAAGUUGAAGUUGGCUGUCCUAACGUUAGCGGU 
340       330       320       310       300       290       280       270       260       250       240       230       220       210       200       190       180

Deep sequencing

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Comment

There are Drosha cuts -9 and -10 on the 5p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Dpu-Mir-375_5p*

mirBase accession

None

Sequence

0- ACUCGAGCUGAUCGUAUAAGCC -22

Get sequence

Mature sequence

Dpu-Mir-375_3p

mirBase accession

MIMAT0012664

Sequence

260- UUUGUUCGUUCGGCUUGAGUUA -282

Get sequence