Mir-375-P2

MirGeneDB ID

Tni-Mir-375-P2

Family name

MIR-375 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-375

Paralogues

Orthologues

Aae-Mir-375 Aca-Mir-375 Aga-Mir-375 Agr-Mir-375 Ami-Mir-375 Asu-Mir-375 Bfl-Mir-375 Bge-Mir-375 Bko-Mir-375 Bla-Mir-375 Bpl-Mir-375 Bta-Mir-375 Cbr-Mir-375 Cel-Mir-375 Cfa-Mir-375 Cin-Mir-375 Cja-Mir-375 Cli-Mir-375 Cpi-Mir-375 Cpo-Mir-375 Dan-Mir-375 Dgr-Mir-375 Dlo-Mir-375 Dma-Mir-375 Dme-Mir-375 Dmo-Mir-375 Dno-Mir-375 Dpu-Mir-375 Dre-Mir-375-P2 Dsi-Mir-375 Dya-Mir-375 Eba-Mir-375 Ebu-Mir-375 Eca-Mir-375 Efe-Mir-375 Esc-Mir-375 Ete-Mir-375 Gga-Mir-375 Gja-Mir-375 Gmo-Mir-375-P2 Gpa-Mir-375 Hme-Mir-375 Hru-Mir-375 Hsa-Mir-375 Isc-Mir-375 Laf-Mir-375 Lan-Mir-375 Lch-Mir-375 Lgi-Mir-375 Lhy-Mir-375 Llo-Mir-375 Loc-Mir-375 Mal-Mir-375-P2 Mdo-Mir-375 Mml-Mir-375 Mmr-Mir-375 Mmu-Mir-375 Mom-Mir-375 Neu-Mir-375 Npo-Mir-375 Oan-Mir-375 Obi-Mir-375 Ocu-Mir-375 Ofu-Mir-375 Ovu-Mir-375 Pab-Mir-375 Pau-Mir-375 Pbv-Mir-375 Pca-Mir-375 Pcr-Mir-375 Pdu-Mir-375 Pfl-Mir-375 Pmi-Mir-375 Pve-Mir-375 Rno-Mir-375 Sha-Mir-375 Sko-Mir-375 Sne-Mir-375 Snu-Mir-375 Spt-Mir-375 Spu-Mir-375 Sto-Mir-375 Tca-Mir-375 Tgu-Mir-375 Tur-Mir-375 War-Mir-375 Xtr-Mir-375

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Nephrozoa

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

2: 17702703-17702760 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-375-P2)

Mir-1788 2: 17694044-17694101 [-] UCSC Ensembl
Mir-375-P2 2: 17702703-17702760 [-] UCSC Ensembl

Seed

UUGUUCG

Precursor
(pre-Mir +30nt flank)

AGAAAACUAGAUCAUGUCUGUACUUGCUUCACGUUGAGCCUCACGCACAAUACCUGAAGAUGAAGUUUUGUUCGUUCGGCUCGCGUUAUGCAGGUAUGGGUCAGCAACUCCAGAAGCC

Get precursor sequence

Structure

        10          20        30        40        50         
AGAAAACUAGAUCAUGU--|         UUC    U     UC   C    U  CUGAA 
                   CUGUACUUGC   ACGU GAGCC  ACG ACAA AC     \
                   GGUAUGGACG   UGCG CUCGG  UGC UGUU UG     G
CCGAAGACCUCAACGACUG^         UAU    -     CU   U    U  AAGUA 
      110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-375-P2_5p*

mirBase accession

None

Sequence

0- ACGUUGAGCCUCACGCACAAUAC -23

Get sequence

Mature sequence

Tni-Mir-375-P2_3p

mirBase accession

MIMAT0003070

Sequence

36- UUUGUUCGUUCGGCUCGCGUUA -58

Get sequence