MirGeneDB ID | Gmo-Mir-375-P2 |
Family name |
MIR-375 (all species) |
Seed |
UUGUUCG |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-mir-375
|
Paralogues |
|
Orthologues |
Aae-Mir-375
Aca-Mir-375
Ami-Mir-375
Asu-Mir-375
Bfl-Mir-375
Bge-Mir-375
Bla-Mir-375
Bpl-Mir-375
Bta-Mir-375
Cbr-Mir-375
Cel-Mir-375
Cfa-Mir-375
Cin-Mir-375
Cli-Mir-375
Cpi-Mir-375
Cpo-Mir-375
Cte-Mir-375
Dan-Mir-375
Dma-Mir-375
Dme-Mir-375
Dmo-Mir-375
Dno-Mir-375
Dpu-Mir-375
Dre-Mir-375-P2
Dsi-Mir-375
Dya-Mir-375
Ebu-Mir-375
Efe-Mir-375
Esc-Mir-375
Ete-Mir-375
Gga-Mir-375
Gja-Mir-375
Hme-Mir-375
Hsa-Mir-375
Isc-Mir-375
Lan-Mir-375
Lch-Mir-375
Lgi-Mir-375
Loc-Mir-375
Mal-Mir-375-P2
Mdo-Mir-375
Mml-Mir-375
Mmu-Mir-375
Npo-Mir-375
Oan-Mir-375
Obi-Mir-375
Ocu-Mir-375
Ovu-Mir-375
Pbv-Mir-375
Pfl-Mir-375
Pmi-Mir-375
Rno-Mir-375
Sha-Mir-375
Sko-Mir-375
Spt-Mir-375
Spu-Mir-375
Sto-Mir-375
Tca-Mir-375
Tgu-Mir-375
Tni-Mir-375-P2
Xtr-Mir-375
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
contig384549: 352-409 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUCUGACUGUUGAUGGUCUGUAUUUGCCUCACGUUGAGCCCCACGCACAAUACCUGAAGGUGAAGUUUUGUUCGUUCGGCUCGCGUUAAGCAGGUACAGGUGUGCAACUUGAAACAAC
Get precursor sequence
|
Structure | 10 20 30 40 50
GUCUGACUGUUGAUGGU--| CUC U CC C U CUGAA
CUGUAUUUGC ACGU GAGCC ACG ACAA AC \
GACAUGGACG UGCG CUCGG UGC UGUU UG G
CAACAAAGUUCAACGUGUG^ AAU - CU U U AAGUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Gmo-Mir-375-P2_5p* |
mirBase accession | MIMAT0044043 |
Sequence |
0- ACGUUGAGCCCCACGCACAAUAC -23
Get sequence
|
Mature sequence |
Gmo-Mir-375-P2_3p |
mirBase accession | MIMAT0044044 |
Sequence |
36- UUUGUUCGUUCGGCUCGCGUUA -58
Get sequence
|