MirGeneDB

MirGeneDB ID

Cpo-Mir-375

Family name MIR-375 (all species)
Seed UUGUUCG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-375
Paralogues
Orthologues Aae-Mir-375  Aca-Mir-375  Ami-Mir-375  Asu-Mir-375  Bfl-Mir-375  Bge-Mir-375  Bta-Mir-375  Cbr-Mir-375  Cel-Mir-375  Cfa-Mir-375  Cgi-Mir-375-P3  Cgi-Mir-375-P4  Cin-Mir-375  Cli-Mir-375  Cpi-Mir-375  Cte-Mir-375  Dan-Mir-375  Dme-Mir-375  Dmo-Mir-375  Dno-Mir-375  Dpu-Mir-375  Dre-Mir-375-P1  Dre-Mir-375-P2  Efe-Mir-375  Ete-Mir-375  Gga-Mir-375  Hme-Mir-375  Hsa-Mir-375  Isc-Mir-375  Lan-Mir-375  Lgi-Mir-375  Mdo-Mir-375  Mml-Mir-375  Mmu-Mir-375  Oan-Mir-375  Ocu-Mir-375  Pfl-Mir-375  Pmi-Mir-375  Rno-Mir-375  Sha-Mir-375  Sko-Mir-375  Spu-Mir-375  Sto-Mir-375  Tca-Mir-375  Tgu-Mir-375  Xtr-Mir-375 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(cavPor3)
scaffold_89: 6176389-6176445 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GCCAGGCCCCGGGCCCUCCGUUCCCGCCCCGCGACGAGCCCCUCGCACAAACCGGACCUGAGCGUUUUGUUCGUUCGGCUCGCGUGAGGCAGGGGCGGCCUCUCAGCACCAGCCCCG
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Structure
        10          20        30        40        50        
GCCAGGCCCCGGGCCCU--|      C   C    A      CCU  C     C GGAC 
                   CCGUUCC GCC CGCG CGAGCC   CG ACAAA C    C
                   GGCGGGG CGG GUGC GCUCGG   GC UGUUU G    U
GCCCCGACCACGACUCUCC^      A   A    -      CUU  U     U CGAG 
     110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Cpo-Mir-375_5p*

MirBase accessionMIMAT0047207
Sequence
0- GCGACGAGCCCCUCGCACAAACC -23
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Mature sequence

Cpo-Mir-375_3p

MirBase accessionMIMAT0047208
Sequence
35- UUUGUUCGUUCGGCUCGCGUGA -57
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