Mir-375-P17a

MirGeneDB ID

Rph-Mir-375-P17a

Family name

MIR-375 (all species)

Species

Japanese carpet shell (Ruditapes philippinarum)

MiRBase ID

Paralogues

Rph-Mir-375-P17b Rph-Mir-375-P17c Rph-Mir-375-P17d Rph-Mir-375-P18 Rph-Mir-375-P19a Rph-Mir-375-P19b

Orthologues

Aae-Mir-375 Aca-Mir-375 Aga-Mir-375 Agr-Mir-375 Ami-Mir-375 Asu-Mir-375 Bfl-Mir-375 Bge-Mir-375 Bko-Mir-375 Bla-Mir-375 Bpl-Mir-375 Bta-Mir-375 Cbr-Mir-375 Cel-Mir-375 Cfa-Mir-375 Cin-Mir-375 Cja-Mir-375 Cli-Mir-375 Cpi-Mir-375 Cpo-Mir-375 Dan-Mir-375 Dgr-Mir-375 Dlo-Mir-375 Dma-Mir-375 Dme-Mir-375 Dmo-Mir-375 Dno-Mir-375 Dpu-Mir-375 Dsi-Mir-375 Dya-Mir-375 Eba-Mir-375 Ebu-Mir-375 Eca-Mir-375 Efe-Mir-375 Esc-Mir-375 Ete-Mir-375 Gga-Mir-375 Gja-Mir-375 Gpa-Mir-375 Hme-Mir-375 Hru-Mir-375 Hsa-Mir-375 Isc-Mir-375 Laf-Mir-375 Lan-Mir-375 Lch-Mir-375 Lgi-Mir-375 Lhy-Mir-375 Llo-Mir-375 Loc-Mir-375 Mdo-Mir-375 Mml-Mir-375 Mmr-Mir-375 Mmu-Mir-375 Mom-Mir-375 Neu-Mir-375 Npo-Mir-375 Oan-Mir-375 Obi-Mir-375 Ocu-Mir-375 Ofu-Mir-375 Ovu-Mir-375 Pab-Mir-375 Pau-Mir-375 Pbv-Mir-375 Pca-Mir-375 Pcr-Mir-375 Pdu-Mir-375 Pfl-Mir-375 Pmi-Mir-375 Pve-Mir-375 Rno-Mir-375 Sha-Mir-375 Sko-Mir-375 Sne-Mir-375 Snu-Mir-375 Spt-Mir-375 Spu-Mir-375 Sto-Mir-375 Tca-Mir-375 Tgu-Mir-375 Tur-Mir-375 War-Mir-375 Xtr-Mir-375

Node of Origin (locus)

R. philippinarum

Node of Origin (family)

Nephrozoa

Genome context
(Ruditapes_GCA_009026015)

CM018532.1: 7264639-7264697 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-375-P17a)

Mir-375-P19b CM018532.1: 7260174-7260233 [+] Ensembl
Mir-375-P17c CM018532.1: 7261471-7261529 [+] Ensembl
Mir-375-P17b CM018532.1: 7262678-7262736 [+] Ensembl
Mir-375-P17a CM018532.1: 7264639-7264697 [+] Ensembl

Seed

UUGUUCA

Precursor
(pre-Mir +30nt flank)

UGGUAUAUAUGGAGAAUAUAUUGUCAAAUGACGCUUGCCAUUUGUAACAAGGCGUAUUAAAUCCAGUUUUGUUCAUUCGGCUCGCGUUAUCACAACAAACAUGUCUACUAUCAUACGGA

Get precursor sequence

Structure

        10        20          30        40        50         
UGGUAUAUAUGGAGAAUAUA-    CAA-|      UU   AUU  U        GUAUU 
                     UUGU    AUGACGC  GCC   UG AACAAGGC     A
                     AACA    UAUUGCG  CGG   AC UUGUUUUG     A
AGGCAUACUAUCAUCUGUACA    ACAC^      CU   CUU  -        ACCUA 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru

Star sequence

Rph-Mir-375-P17a_5p* (predicted)

mirBase accession

None

Sequence

0- ACGCUUGCCAUUUGUAACAAGGC -23

Get sequence

Mature sequence

Rph-Mir-375-P17a_3p

mirBase accession

None

Sequence

37- UUUGUUCAUUCGGCUCGCGUUA -59

Get sequence