MirGeneDB 3.0

40 microRNA genes with node of origin R. philippinarum

						Sort by genome coordinates								Motifs
MirGeneDB ID ▲	MiRBase ID	Family	Seed	5p accession	3p accession	Chromosome	Start	End	Strand	Node of origin (locus)	Node of origin (family)	Iso­miR	3' NTU	UG	UGUG	CNNC
Rph-Bantam-P21	None	BANTAM	GAGAUCA	None	None	CM018540.1	15041974	15042034	-	R. philippinarum	Protostomia		No			1
Rph-Bantam-P22	None	BANTAM	GAGAUCA	None	None	CM018540.1	15041340	15041400	-	R. philippinarum	Protostomia		No			1
Rph-Mir-2-o63	None	MIR-2	AUCACAG	None	None	CM018536.1	47738775	47738832	-	R. philippinarum	Protostomia		No
Rph-Mir-2-o64	None	MIR-2	AUCACAG	None	None	CM018536.1	47738531	47738593	-	R. philippinarum	Protostomia		No			1
Rph-Mir-2-o65	None	MIR-2	AUCACAG	None	None	CM018536.1	47738240	47738298	-	R. philippinarum	Protostomia		No
Rph-Mir-2-o66	None	MIR-2	AUCACAG	None	None	CM018536.1	47737950	47738006	-	R. philippinarum	Protostomia		No	1		1
Rph-Mir-2-o67	None	MIR-2	AUCACAG	None	None	QUSP01002410.1	64738	64796	-	R. philippinarum	Protostomia		No	1		1
Rph-Mir-2-o68	None	MIR-2	AUCACAG	None	None	QUSP01002410.1	64540	64597	-	R. philippinarum	Protostomia		No
Rph-Mir-2-o69	None	MIR-2	AUCACAG	None	None	QUSP01002410.1	63485	63542	-	R. philippinarum	Protostomia		No
Rph-Mir-2-o70	None	MIR-2	AUCACAG	None	None	QUSP01002410.1	60291	60350	-	R. philippinarum	Protostomia		No		1
Rph-Mir-2-o71	None	MIR-2	AUCACAG	None	None	QUSP01002410.1	60139	60197	-	R. philippinarum	Protostomia		No			1
Rph-Mir-2-o72	None	MIR-2	AUCACAG	None	None	QUSP01001813.1	155017	155075	-	R. philippinarum	Protostomia		No
Rph-Mir-2-o73	None	MIR-2	AUCACAG	None	None	QUSP01001813.1	154868	154926	-	R. philippinarum	Protostomia		No			1
Rph-Mir-33-P15	None	MIR-33	AAUGUUC	None	None	CM018523.1	7580295	7580352	+	R. philippinarum	Bilateria		No		1	1
Rph-Mir-33-P16	None	MIR-33	AAUGUUC	None	None	CM018523.1	7585243	7585300	+	R. philippinarum	Bilateria		No		1	1
Rph-Mir-87-o19	None	MIR-87	UGAGCAA	None	None	CM018532.1	24178980	24179040	-	R. philippinarum	Protostomia		No			1
Rph-Mir-87-o20	None	MIR-87	UGAGCAA	None	None	CM018532.1	24178272	24178331	-	R. philippinarum	Protostomia		No			1
Rph-Mir-87-o21	None	MIR-87	UGAGCAA	None	None	CM018532.1	24177000	24177060	-	R. philippinarum	Protostomia		No			1
Rph-Mir-92-o51	None	MIR-92	AUUGCAC	None	None	CM018539.1	17459757	17459814	+	R. philippinarum	Bilateria		No
Rph-Mir-92-o52	None	MIR-92	AUUGCAC	None	None	CM018539.1	17477113	17477170	+	R. philippinarum	Bilateria		No		1	1
Rph-Mir-92-o53	None	MIR-92	AUUGCAC	None	None	CM018539.1	17477279	17477336	+	R. philippinarum	Bilateria		No			1
Rph-Mir-92-o54	None	MIR-92	AUUGCAC	None	None	CM018539.1	17477769	17477831	+	R. philippinarum	Bilateria		No
Rph-Mir-92-o55	None	MIR-92	AUUGCAC	None	None	CM018539.1	17478661	17478716	+	R. philippinarum	Bilateria		No
Rph-Mir-124-P27	None	MIR-124	AAGGCAC	None	None	CM018524.1	22474341	22474398	-	R. philippinarum	Bilateria		No			1
Rph-Mir-124-P28	None	MIR-124	AAGGCAC	None	None	CM018524.1	22473101	22473158	-	R. philippinarum	Bilateria		No			1
Rph-Mir-375-P17a	None	MIR-375	UUGUUCA	None	None	CM018532.1	7264639	7264697	+	R. philippinarum	Nephrozoa		No			1
Rph-Mir-375-P17b	None	MIR-375	UUGUUCA	None	None	CM018532.1	7262678	7262736	+	R. philippinarum	Nephrozoa		No			1
Rph-Mir-375-P17c	None	MIR-375	UUGUUCA	None	None	CM018532.1	7261471	7261529	+	R. philippinarum	Nephrozoa		No			1
Rph-Mir-375-P17d	None	MIR-375	UUGUUCA	None	None	CM018532.1	7924759	7924817	-	R. philippinarum	Nephrozoa		No			1
Rph-Mir-375-P18	None	MIR-375	UUGUUCA	None	None	CM018532.1	7922725	7922783	-	R. philippinarum	Nephrozoa		No			1
Rph-Mir-375-P19a	None	MIR-375	UUGUUCA	None	None	CM018532.1	7926030	7926089	-	R. philippinarum	Nephrozoa		No			1
Rph-Mir-375-P19b	None	MIR-375	UUGUUCA	None	None	CM018532.1	7260174	7260233	+	R. philippinarum	Nephrozoa		No			1
Rph-Novel-1-P1a	None	RPH-NOVEL-1	AUAUCUG	None	None	None	None	None	None	R. philippinarum	R. philippinarum		No
Rph-Novel-1-P1b	None	RPH-NOVEL-1	AUAUCUG	None	None	None	None	None	None	R. philippinarum	R. philippinarum		No
Rph-Novel-2	None	RPH-NOVEL-2	CGGGACA	None	None	CM018529.1	4830419	4830479	+	R. philippinarum	R. philippinarum		No			1
Rph-Novel-3	None	RPH-NOVEL-3	GUGAUAG	None	None	CM018531.1	20317456	20317513	-	R. philippinarum	R. philippinarum		No			1
Rph-Novel-4	None	RPH-NOVEL-4	AAUGCCC	None	None	CM018536.1	3932879	3932939	-	R. philippinarum	R. philippinarum		No		1
Rph-Novel-5	None	RPH-NOVEL-5	UAGGCCA	None	None	CM018529.1	36733602	36733658	-	R. philippinarum	R. philippinarum		No			1
Rph-Novel-6	None	RPH-NOVEL-6	GUUUCAU	None	None	CM018526.1	52477957	52478015	-	R. philippinarum	R. philippinarum		No			1
Rph-Novel-7	None	RPH-NOVEL-7	UUGAACG	None	None	CM018532.1	2388912	2388969	-	R. philippinarum	R. philippinarum		No			1

(red - mature/co-mature, blue - star)

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