MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-33-P16

Family name MIR-33 (all species)
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-33-P15 
Orthologues Aae-Mir-33  Aga-Mir-33  Ava-Mir-33  Bge-Mir-33  Cin-Mir-33  Csc-Mir-33  Cte-Mir-33  Dan-Mir-33  Dgr-Mir-33  Dlo-Mir-33  Dma-Mir-33  Dme-Mir-33  Dmo-Mir-33  Dpu-Mir-33  Dsi-Mir-33  Dya-Mir-33  Eba-Mir-33  Ebu-Mir-33  Efe-Mir-33  Egr-Mir-33  Esc-Mir-33  Gpa-Mir-33  Gsp-Mir-33  Hru-Mir-33  Isc-Mir-33  Lgi-Mir-33  Llo-Mir-33  Mgi-Mir-33  Mom-Mir-33  Npo-Mir-33  Obi-Mir-33  Ofu-Mir-33  Ovu-Mir-33  Pau-Mir-33  Pca-Mir-33  Pcr-Mir-33  Pdu-Mir-33  Pfl-Mir-33  Pmi-Mir-33  Sko-Mir-33  Snu-Mir-33  Spu-Mir-33  Tca-Mir-33  War-Mir-33  Xbo-Mir-33 
Node of Origin (locus) R. philippinarum
Node of Origin (family) Bilateria
Genome context
(Ruditapes_GCA_009026015)		 CM018523.1: 7585243-7585300 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-33-P16)		 Mir-33-P15 CM018523.1: 7580295-7580352 [+] Ensembl
Mir-33-P16 CM018523.1: 7585243-7585300 [+] Ensembl
Seed AAUGUUC
Precursor
(pre-Mir +30nt flank)		 
GGUUACUACAGGGAUGGACUUACUCUGGUUGUGCAUUGUAGUUGCAUUGCAUGUCCUUCACACUGUGCAAUGUUCCUGCAGUGCAAUAACUGGGCUUGUCAUAGCAGCAAACAAAUCU
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Structure
        10        20         30         40        50        
GGUUACUACAGGGAUGGACUUAC-  UG    -|         UU        UGUCCU 
                        UC  GUUG UGCAUUGUAG  GCAUUGCA      U
                        GG  CAAU ACGUGACGUC  UGUAACGU      C
UCUAAACAAACGACGAUACUGUUC  GU    A^         CU        GUCACA 
      110       100        90        80        70        60
Deep sequencing
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CommentThe 3p arm appears to be monoadenylated.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Star sequence

Rph-Mir-33-P16_5p*
mirBase accessionNone
Sequence 
0- GUGCAUUGUAGUUGCAUUGCA -21
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Mature sequence

Rph-Mir-33-P16_3p
mirBase accessionNone
Sequence 
37- CAAUGUUCCUGCAGUGCAAUA -58
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