| MirGeneDB ID | Rph-Novel-6 |
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| Family name |
RPH-NOVEL-6 (all species) |
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| Species |
Japanese carpet shell (Ruditapes philippinarum) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
R. philippinarum
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| Node of Origin (family) |
R. philippinarum
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Genome context
(Ruditapes_GCA_009026015) |
CM018526.1: 52477957-52478015 [-]
Ensembl
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| Seed |
GUUUCAU |
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Precursor
(pre-Mir +30nt flank) |
UAUCUCAAAAUGUAGAAAAUGGGUUUAUAUAGCUCCAUGUCAUUGUGACAUUGUAAAACAAACAAAUGUUUCAUUGGCAUGGGGACUGCUGUAACCUUGAAUUGCAUCAUAUUAUGGAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UAUCUCAAAAUGUAGAAAAU-- U - -| U U GUAAA
GGG UUAUA UAG CUCCAUGUCA UG GACAUU A
UCC AAUGU GUC GGGGUACGGU AC UUGUAA C
UAGGUAUUAUACUACGUUAAGU - C A^ U U ACAAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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| Star sequence |
Rph-Novel-6_5p* |
| mirBase accession | None |
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| Sequence |
0- AGCUCCAUGUCAUUGUGACAUU -22
Get sequence
|
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| Mature sequence |
Rph-Novel-6_3p |
| mirBase accession | None |
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| Sequence |
36- UGUUUCAUUGGCAUGGGGACUGC -59
Get sequence
|
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