| MirGeneDB ID | Rph-Novel-5 |
|---|
| Family name |
RPH-NOVEL-5 (all species) |
|---|
| Species |
Japanese carpet shell (Ruditapes philippinarum) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
R. philippinarum
|
|---|
| Node of Origin (family) |
R. philippinarum
|
|---|
Genome context
(Ruditapes_GCA_009026015) |
CM018529.1: 36733602-36733658 [-]
Ensembl
|
|---|
| Seed |
UAGGCCA |
|---|
Precursor
(pre-Mir +30nt flank) |
CCGUGGAUGAGCAGAUGAGAUUUGACGGGACGGAAGAAACCUUCGUCUAGAGUGAUAAUAUACAUCUAGGCCAGGAUUACUUCCGUUCUGACAAAUCUACAAAACAACCUUCCUGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCGUGGAUGAGCAGAUG-- A -| A UC GUGAUA
AGAUUUG CGGGACGGAAG AA CCU GUCUAGA \
UCUAAAC GUCUUGCCUUC UU GGA CGGAUCU A
ACGUCCUUCCAACAAAACA A A^ A C- ACAUAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Rph-Novel-5_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGGAAGAAACCUUCGUCUAGAGU -23
Get sequence
|
|---|
| Mature sequence |
Rph-Novel-5_3p |
| mirBase accession | None |
|---|
| Sequence |
35- CUAGGCCAGGAUUACUUCCGUU -57
Get sequence
|
|---|
