| MirGeneDB ID | Rph-Novel-4 |
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| Family name |
RPH-NOVEL-4 (all species) |
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| Species |
Japanese carpet shell (Ruditapes philippinarum) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
R. philippinarum
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| Node of Origin (family) |
R. philippinarum
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Genome context
(Ruditapes_GCA_009026015) |
CM018536.1: 3932879-3932939 [-]
Ensembl
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| Seed |
AAUGCCC |
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Precursor
(pre-Mir +30nt flank) |
GGUCUAACGCUGCGCUGAUGUUGCAAAAUGAGGAGCUUAUUGAGGCGUUUCAGUGAUUAAAUAUAUUUGGAAUGCCCCAAGAAGUUUCUUAUUUUGGGCAUUAAAUUCUAAACAGAAAAUA
Get precursor sequence
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| Structure | 10 20 30 40 50
GGUCUAACGCUGCGCUG---| G A A GUGAUUA
AUGUU CAAAAUGAGGAGCUU UUG GGCGUUUCA \
UACGG GUUUUAUUCUUUGAA AAC CCGUAAGGU A
AUAAAAGACAAAUCUUAAAU^ - G C UUAUAUA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UGUG in loop |
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Tissue expression
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| Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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| Star sequence |
Rph-Novel-4_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGAGCUUAUUGAGGCGUUUCA -22
Get sequence
|
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| Mature sequence |
Rph-Novel-4_3p |
| mirBase accession | None |
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| Sequence |
39- GAAUGCCCCAAGAAGUUUCUUA -61
Get sequence
|
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