| MirGeneDB ID | Rph-Novel-3 |
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| Family name |
RPH-NOVEL-3 (all species) |
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| Species |
Japanese carpet shell (Ruditapes philippinarum) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
R. philippinarum
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| Node of Origin (family) |
R. philippinarum
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Genome context
(Ruditapes_GCA_009026015) |
CM018531.1: 20317456-20317513 [-]
Ensembl
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| Seed |
GUGAUAG |
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Precursor
(pre-Mir +30nt flank) |
UCAUACACAUGAAAGCAGAGACUUUUUGUACGUGAUAGGUCUUGCAUUGCUGUUUAGUUUAUUUCACCAAUGCAUAAUCUACCACUGUAUAAAUUUCUCUCGACACUACUAGGAAUGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UCAUACACAUGAAAGCA--| CUU - A CU C UUUAG
GAGA UUUGUAC GUG UAGGU UGCAUUG UG U
CUCU AAAUAUG CAC AUCUA ACGUAAC AC U
GGUAAGGAUCAUCACAGCU^ UU- U C AU C UUUAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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| Mature sequence |
Rph-Novel-3_5p |
| mirBase accession | None |
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| Sequence |
0- CGUGAUAGGUCUUGCAUUGCUG -22
Get sequence
|
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| Co-mature sequence |
Rph-Novel-3_3p |
| mirBase accession | None |
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| Sequence |
36- CCAAUGCAUAAUCUACCACUGU -58
Get sequence
|
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