MirGeneDB 2.1
MirGeneDB ID

Cli-Mir-338-P1

Family name MIR-338 (all species)
Seed CCAGCAU
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-338a
Paralogues Cli-Mir-338-P2 
Orthologues Ami-Mir-338-P1  Cmi-Mir-338-P1  Cpi-Mir-338-P1  Dre-Mir-338-P1  Ebu-Mir-338-o1  Gmo-Mir-338-P1  Lch-Mir-338-P1  Loc-Mir-338-P1  Mal-Mir-338-P1  Mun-Mir-338-P1  Sto-Mir-338-P1  Tgu-Mir-338-P1  Tni-Mir-338-P1  Xla-Mir-338-P1a  Xla-Mir-338-P1b  Xtr-Mir-338-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold1084: 334966-335025 [+]
Precursor
(pre-Mir +30nt flank)
AGAUUCUCGUUAUAAAUGUUUACUUCUAGCAACACUAUCCUGAUGCUGUCAGAGUAAGUGGUAAAGCUCCAGCAUCAGUGAUUUUGUUGUUAGUGGUAAAUUCAAGCAGCCAAAAAUGUA
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Structure
        10          20        30         40        50        60
AGAUUCUCGUUAUAAAU--       U         CU   -|        UCA    AAGU 
                   GUUUACU CUAGCAACA  AUC CUGAUGCUG   GAGU    G
                   UAAAUGG GAUUGUUGU  UAG GACUACGAC   CUCG    G
AUGUAAAAACCGACGAACU       U         UU   U^        ---    AAAU 
.       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Cl Cl Cl Cl Cl To
Star sequence

Cli-Mir-338-P1_5p*
mirBase accessionMIMAT0038618
Sequence 
0- AACACUAUCCUGAUGCUGUCAGAGU -25
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Mature sequence

Cli-Mir-338-P1_3p
mirBase accessionMIMAT0038619
Sequence 
37- UCCAGCAUCAGUGAUUUUGUUGU -60
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