| MirGeneDB ID | Xla-Mir-338-P1a |
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| Family name |
MIR-338 (all species) |
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| Seed |
CCAGCAU |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-338-P1b
Xla-Mir-338-P2c
Xla-Mir-338-P2d
|
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| Orthologues |
Ami-Mir-338-P1
Cli-Mir-338-P1
Cmi-Mir-338-P1
Cpi-Mir-338-P1
Dre-Mir-338-P1
Ebu-Mir-338-o1
Gmo-Mir-338-P1
Lch-Mir-338-P1
Loc-Mir-338-P1
Mal-Mir-338-P1
Mun-Mir-338-P1
Sto-Mir-338-P1
Tgu-Mir-338-P1
Tni-Mir-338-P1
Xtr-Mir-338-P1
|
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030740.1: 99893009-99893068 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CCACUGAGAGGCAGUGUGUUUGCUUCCGGCAACAAUAUCCUGAUGCCGUCUGAGUGUGCGGGAUAGCUCCAGCAUCAGUGAUUUUGUUGGUGGUGGUAAAUAAAAGCAUCUUGCACUCUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CCACUGAGAGGCAGUGU-- U G U -| CGUCU GUGC
GUUUGCU CCG CAACAA AUC CUGAUGC GAGU G
UAAAUGG GGU GUUGUU UAG GACUACG CUCG G
GUCUCACGUUCUACGAAAA U G U U^ AC--- AUAG
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Xla-Mir-338-P1a_5p* |
| mirBase accession | None |
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| Sequence |
0- AACAAUAUCCUGAUGCCGUCUGAGU -25
Get sequence
|
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| Mature sequence |
Xla-Mir-338-P1a_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UCCAGCAUCAGUGAUUUUGUUGG -60
Get sequence
|
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