MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-338-P2d

Family name MIR-338 (all species)
Seed ACAAUAU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-338-P1a  Xla-Mir-338-P1b  Xla-Mir-338-P2c 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Ebu-Mir-338-o2  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Lch-Mir-338-P2  Loc-Mir-338-P2  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Xtr-Mir-338-P2 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030741.1: 22008109-22008169 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUGGAGGCCUCUUAUGGUUUGUUCCCUGGAACAAUAUCCUGAUGCUGAAUGAGUGGGACAUACAGGCUCCAGCAUCAGUGAUUUUGUUGCAGGCGGCACACAUUGCUCCUGGAAGGCUGC
Get precursor sequence
Structure
        10          20        30         40        50         
CCUGGAGGCCUCUUAUG--  U   UC    G     U   -|        AAUGAGUGGG 
                   GU UGU  CCUG AACAA AUC CUGAUGCUG          A
                   CA ACG  GGAC UUGUU UAG GACUACGAC          C
CGUCGGAAGGUCCUCGUUA  C   GC    G     U   U^        CUCGGACAUA 
 .       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg He Re St St St St
Mature sequence

Xla-Mir-338-P2d_5p
mirBase accessionNone
Sequence 
0- AACAAUAUCCUGAUGCUGAAUG -22
Get sequence
Co-mature sequence

Xla-Mir-338-P2d_3p
mirBase accessionNone
Sequence 
38- UCCAGCAUCAGUGAUUUUGUUGC -61
Get sequence