MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-338-P2

Family name MIR-338 (all species)
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-338
Paralogues Cfa-Mir-338-P2-as 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cja-Mir-338-P2  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpi-Mir-338-P2  Cpi-Mir-338-P2-as  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Dre-Mir-338-P2b  Ebu-Mir-338-o2  Eca-Mir-338-P2  Eca-Mir-338-P2-as  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Laf-Mir-338-P2  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmr-Mir-338-P2  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Mun-Mir-338-P2e  Mun-Mir-338-P2f  Neu-Mir-338-P2  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pab-Mir-338-P2  Pab-Mir-338-P2-as  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Tni-Mir-338-P2b  Xla-Mir-338-P2c  Xla-Mir-338-P2d  Xtr-Mir-338-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)		 chr9: 918652-918710 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-338-P2)		 Mir-338-P2-as chr9: 918648-918710 [-] UCSC Ensembl
Mir-338-P2 chr9: 918652-918710 [+] UCSC Ensembl
Seed CCAGCAU
Precursor
(pre-Mir +30nt flank)		 
GCCCCGGACGCCGCACGGGCCGUCCUCCCCAACAAUAUCCUGGUGCUGAGUGAUGACACAUGCAACUCCAGCAUCAGUGAUUUUGUUGAAGAGGGCAGCUGCCAGCCUCCCGACCUGCC
Get precursor sequence
Structure
        10          20        30         40         50        
GCCCCGGACGCCGCACG--   C      CC      U   -        -|   GAUGAC 
                   GGC GUCCUC  CAACAA AUC CUGGUGCU GAGU      \
                   UCG CGGGAG  GUUGUU UAG GACUACGA CUCA      A
CCGUCCAGCCCUCCGACCG   A      AA      U   U        C^   ACGUAC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-338-P2_5p*
mirBase accessionNone
Sequence 
0- AACAAUAUCCUGGUGCUGAGU -21
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Mature sequence

Cfa-Mir-338-P2_3p
mirBase accessionMIMAT0006739
Sequence 
36- UCCAGCAUCAGUGAUUUUGUUGA -59
Get sequence
Proposed targets TargetScanVert: cfa-miR-338
miRDB: MIMAT0006739