MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-338-P2

Family name MIR-338 (all species)
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-338a
Paralogues Cpi-Mir-338-P1  Cpi-Mir-338-P2-as 
Orthologues Aca-Mir-338-P2  Ami-Mir-338-P2  Bta-Mir-338-P2  Bta-Mir-338-P2-as  Cfa-Mir-338-P2  Cfa-Mir-338-P2-as  Cja-Mir-338-P2  Cli-Mir-338-P2  Cmi-Mir-338-P2  Cpo-Mir-338-P2  Dno-Mir-338-P2  Dre-Mir-338-P2a  Dre-Mir-338-P2b  Ebu-Mir-338-o2  Eca-Mir-338-P2  Eca-Mir-338-P2-as  Ete-Mir-338-P2  Ete-Mir-338-P2-as  Gga-Mir-338-P2  Gja-Mir-338-P2  Gmo-Mir-338-P2a  Gmo-Mir-338-P2b  Hsa-Mir-338-P2  Hsa-Mir-338-P2-as  Laf-Mir-338-P2  Lch-Mir-338-P2  Loc-Mir-338-P2  Mal-Mir-338-P2a  Mal-Mir-338-P2b  Mdo-Mir-338-P2  Mml-Mir-338-P2  Mml-Mir-338-P2-as  Mmr-Mir-338-P2  Mmu-Mir-338-P2  Mmu-Mir-338-P2-as  Mun-Mir-338-P2e  Mun-Mir-338-P2f  Neu-Mir-338-P2  Oan-Mir-338-P2  Ocu-Mir-338-P2  Pab-Mir-338-P2  Pab-Mir-338-P2-as  Pbv-Mir-338-P2  Rno-Mir-338-P2  Rno-Mir-338-P2-as  Sha-Mir-338-P2  Spt-Mir-338-P2  Sto-Mir-338-P2  Tgu-Mir-338-P2  Tgu-Mir-338-P2-as  Tni-Mir-338-P2a  Tni-Mir-338-P2b  Xla-Mir-338-P2c  Xla-Mir-338-P2d  Xtr-Mir-338-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH584464: 13339455-13339515 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-338-P2)		 Mir-338-P2-as JH584464: 13339451-13339515 [-] UCSC Ensembl
Mir-338-P2 JH584464: 13339455-13339515 [+] UCSC Ensembl
Seed ACAAUAU
Precursor
(pre-Mir +30nt flank)		 
CCACCCACCGCCCUCUGGCUUCUCCUCCCCAACAAUAUCCUGGUGCUGAGUGAGUUGCACACGGAGACUCCAGCAUCAGUGAUUUUGUUGAAGAGGGCGAGCGCUGGCUUCUGGGGCCGUC
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Structure
        10          20        30         40         50         
CCACCCACCGCCCUCUG--    C     CC      U   -        -|   GAGUUGC 
                   GCUU UCCUC  CAACAA AUC CUGGUGCU GAGU       \
                   CGAG GGGAG  GUUGUU UAG GACUACGA CUCA       A
CUGCCGGGGUCUUCGGUCG    C     AA      U   U        C^   GAGGCAC 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Te Te Te To
Mature sequence

Cpi-Mir-338-P2_5p
mirBase accessionMIMAT0037864
Sequence 
0- AACAAUAUCCUGGUGCUGAGU -21
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Co-mature sequence

Cpi-Mir-338-P2_3p
mirBase accessionMIMAT0037865
Sequence 
38- UCCAGCAUCAGUGAUUUUGUUGA -61
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