MirGeneDB ID | Sha-Mir-338-P2 |
Family name |
MIR-338 (all species) |
Seed |
CCAGCAU |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
sha-mir-338
|
Paralogues |
|
Orthologues |
Aca-Mir-338-P2
Ami-Mir-338-P2
Bta-Mir-338-P2
Bta-Mir-338-P2-as
Cfa-Mir-338-P2
Cfa-Mir-338-P2-as
Cli-Mir-338-P2
Cmi-Mir-338-P2
Cpi-Mir-338-P2
Cpi-Mir-338-P2-as
Cpo-Mir-338-P2
Dno-Mir-338-P2
Dre-Mir-338-P2a
Dre-Mir-338-P2b
Ebu-Mir-338-o2
Ete-Mir-338-P2
Ete-Mir-338-P2-as
Gga-Mir-338-P2
Gja-Mir-338-P2
Gmo-Mir-338-P2a
Gmo-Mir-338-P2b
Hsa-Mir-338-P2
Hsa-Mir-338-P2-as
Lch-Mir-338-P2
Loc-Mir-338-P2
Mal-Mir-338-P2a
Mal-Mir-338-P2b
Mdo-Mir-338-P2
Mml-Mir-338-P2
Mml-Mir-338-P2-as
Mmu-Mir-338-P2
Mmu-Mir-338-P2-as
Mun-Mir-338-P2e
Mun-Mir-338-P2f
Oan-Mir-338-P2
Ocu-Mir-338-P2
Pbv-Mir-338-P2
Rno-Mir-338-P2
Rno-Mir-338-P2-as
Spt-Mir-338-P2
Sto-Mir-338-P2
Tgu-Mir-338-P2
Tgu-Mir-338-P2-as
Tni-Mir-338-P2a
Tni-Mir-338-P2b
Xla-Mir-338-P2c
Xla-Mir-338-P2d
Xtr-Mir-338-P2
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (DEVIL_add) |
GL856847.1: 53467-53527 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCACCACUGCUCAUCUUGGCUUUCCUCCCCAACAAUAUCCUGAUGCUGAGUGAGCGGCACAUAGAGACUCCAGCAUCAGUGAUUUUGUUGAAGAGGGUGGCUGCCGGCUUCUUCCUGACCU
Get precursor sequence
|
Structure | 10 20 30 40 50
CCACCACUGCUCAUCUU-- U CC U - -| GAGCGGC
GGCU UCCUC CAACAA AUC CUGAUGCU GAGU \
UCGG GGGAG GUUGUU UAG GACUACGA CUCA A
UCCAGUCCUUCUUCGGCCG U AA U U C^ GAGAUAC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Sha-Mir-338-P2_5p* |
mirBase accession | None |
Sequence |
0- AACAAUAUCCUGAUGCUGAGU -21
Get sequence
|
Mature sequence |
Sha-Mir-338-P2_3p |
mirBase accession | MIMAT0022818 |
Sequence |
38- UCCAGCAUCAGUGAUUUUGUUGA -61
Get sequence
|